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The map label for this gene is yukF

Identifier: 255767729

GI number: 255767729

Start: 3276955

End: 3278223

Strand: Direct

Name: yukF

Synonym: BSU31920

Alternate gene names: 255767729

Gene position: 3276955-3278223 (Clockwise)

Preceding gene: 16080232

Following gene: 16080244

Centisome position: 77.73

GC content: 42.71

Gene sequence:

>1269_bases
ATGTCAAAGAGAAATCAAGCACGAAAAGTAGGGAGATTTATGACCATGCCGAATGATCCGTTTAAATATAGTTTTGACAG
ACTTGAAGATGTGGCTGATCATATCAGCGACGTTCTGCGGTGCCCGATCACCATAGAGGATGTTAACCACAAGCTGCTTG
CCTACAGTACACACAGCGACTGCACAGACCCTGCCCGGACGTCTACCATTATTGGCAGAAGGGTACCGGAGAAGGTGATT
AACAAGCTGTGGAAAGACGGGACAATTCCTGCTCTCTTAAAAACGGACCAGCCGATCAGAGTCAAGCAAATCGATGAAGT
CGGGCTGAGCAATCGCGTCGCTATTTCGATTTGGAAAAACAAGCAAGTACTTGGCTTCATATGGGCGCTTGAGATCCAAA
AAACATTGTCCGATGAAGATCTGCTGACATTGCAAATGGCAGCAAAAGCAGTGAAAAACAAGCTTCTCAAACTTCAAATC
AGAAAAACGAAAAATGAAGAACGCAGCCAAGAATTTTTCTGGAAAATGCTGACCGGACACATCCATCAGGAGGATGATAT
GGCGGATGGGTTCCATAAGCTTGGAATGGCCGCTCCTTCAGAGTTTTCCGTTATGATCATCCGCATAAATGGCGAGCTGA
CTGAAAAAATCGAACAGCAGCTGCAATATTTACAGGAAACGACCCAGCAGGTTTACGTGCTGCTGGCGACCGTAGATTCC
AATGAACTTATTATATTAACCTCACCCAAAACAGATCATCCTTTTCAAGATTTAAAACAGTTTGCTTTAAGTACGCAAAA
ACAGCTGAAGGAGCGGTATAAAATAGAAGACGTTTCTATCGCTTTTGGCGGAATATACAACTCTATTTCTTTTGTCTCCC
GCTCCTATCAGGAAGCATTGTCCGTCTTAAAAACGAAGGAACGGTTCGCTGAAGAGACCAAACATCTTTTCAGCTTTTCT
GAGTTAGGCATTTATCAATACTTAGATGTCTTAAATGAAAAACGGAAACAGGCGGGCCATTATAATTACTCGCTTTCCAA
ACTGGAACAATATGACCGGGATCACCAGTCAAATATGGTAGAGACGCTAGAGCGCTTTATTGAAGCGGACAGCAACGTGA
ATACCGCTTCCAAGCTGTTAAATATACACGTTAATACGTTGAATTACCGACTCAAGCGGATCAGCCAGATCGCTGAAATT
GATTTGAAAAATGTGAATCAAAAATTCACCATCTATTTAGATATCAAACTTCGGCACATGGATTTGTGA

Upstream 100 bases:

>100_bases
GTATATAGAACGTTTCTCTCATGAAATTGTTTTTTTGCTTCTGTTCTTTGTTGTTGATTTTCACAAACAACAACAATCAT
AATAAAAGGAAGGGGATGAG

Downstream 100 bases:

>100_bases
AATTTCACAAATCCATGTTTTTTTATTTTCTTAATCAAACAAAGAATTTTCCAAAATATCAAGCTACACTAAAAATATCA
CATATACAGGAGGAGACAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MSKRNQARKVGRFMTMPNDPFKYSFDRLEDVADHISDVLRCPITIEDVNHKLLAYSTHSDCTDPARTSTIIGRRVPEKVI
NKLWKDGTIPALLKTDQPIRVKQIDEVGLSNRVAISIWKNKQVLGFIWALEIQKTLSDEDLLTLQMAAKAVKNKLLKLQI
RKTKNEERSQEFFWKMLTGHIHQEDDMADGFHKLGMAAPSEFSVMIIRINGELTEKIEQQLQYLQETTQQVYVLLATVDS
NELIILTSPKTDHPFQDLKQFALSTQKQLKERYKIEDVSIAFGGIYNSISFVSRSYQEALSVLKTKERFAEETKHLFSFS
ELGIYQYLDVLNEKRKQAGHYNYSLSKLEQYDRDHQSNMVETLERFIEADSNVNTASKLLNIHVNTLNYRLKRISQIAEI
DLKNVNQKFTIYLDIKLRHMDL

Sequences:

>Translated_422_residues
MSKRNQARKVGRFMTMPNDPFKYSFDRLEDVADHISDVLRCPITIEDVNHKLLAYSTHSDCTDPARTSTIIGRRVPEKVI
NKLWKDGTIPALLKTDQPIRVKQIDEVGLSNRVAISIWKNKQVLGFIWALEIQKTLSDEDLLTLQMAAKAVKNKLLKLQI
RKTKNEERSQEFFWKMLTGHIHQEDDMADGFHKLGMAAPSEFSVMIIRINGELTEKIEQQLQYLQETTQQVYVLLATVDS
NELIILTSPKTDHPFQDLKQFALSTQKQLKERYKIEDVSIAFGGIYNSISFVSRSYQEALSVLKTKERFAEETKHLFSFS
ELGIYQYLDVLNEKRKQAGHYNYSLSKLEQYDRDHQSNMVETLERFIEADSNVNTASKLLNIHVNTLNYRLKRISQIAEI
DLKNVNQKFTIYLDIKLRHMDL
>Mature_421_residues
SKRNQARKVGRFMTMPNDPFKYSFDRLEDVADHISDVLRCPITIEDVNHKLLAYSTHSDCTDPARTSTIIGRRVPEKVIN
KLWKDGTIPALLKTDQPIRVKQIDEVGLSNRVAISIWKNKQVLGFIWALEIQKTLSDEDLLTLQMAAKAVKNKLLKLQIR
KTKNEERSQEFFWKMLTGHIHQEDDMADGFHKLGMAAPSEFSVMIIRINGELTEKIEQQLQYLQETTQQVYVLLATVDSN
ELIILTSPKTDHPFQDLKQFALSTQKQLKERYKIEDVSIAFGGIYNSISFVSRSYQEALSVLKTKERFAEETKHLFSFSE
LGIYQYLDVLNEKRKQAGHYNYSLSKLEQYDRDHQSNMVETLERFIEADSNVNTASKLLNIHVNTLNYRLKRISQIAEID
LKNVNQKFTIYLDIKLRHMDL

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUKF_BACSU (P71073)

Other databases:

- EMBL:   Z82015
- EMBL:   AL009126
- PIR:   H70013
- RefSeq:   NP_391070.2
- ProteinModelPortal:   P71073
- SMR:   P71073
- EnsemblBacteria:   EBBACT00000001353
- GeneID:   938860
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31920
- NMPDR:   fig|224308.1.peg.3195
- GenoList:   BSU31920
- GeneTree:   EBGT00050000001502
- HOGENOM:   HBG475416
- ProtClustDB:   CLSK872920
- BioCyc:   BSUB:BSU31920-MONOMER
- InterPro:   IPR010312

Pfam domain/function: PF06018 CodY

EC number: NA

Molecular weight: Translated: 49021; Mature: 48890

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRNQARKVGRFMTMPNDPFKYSFDRLEDVADHISDVLRCPITIEDVNHKLLAYSTHSD
CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCC
CTDPARTSTIIGRRVPEKVINKLWKDGTIPALLKTDQPIRVKQIDEVGLSNRVAISIWKN
CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEEECC
KQVLGFIWALEIQKTLSDEDLLTLQMAAKAVKNKLLKLQIRKTKNEERSQEFFWKMLTGH
CCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHCC
IHQEDDMADGFHKLGMAAPSEFSVMIIRINGELTEKIEQQLQYLQETTQQVYVLLATVDS
CCCCCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECC
NELIILTSPKTDHPFQDLKQFALSTQKQLKERYKIEDVSIAFGGIYNSISFVSRSYQEAL
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
SVLKTKERFAEETKHLFSFSELGIYQYLDVLNEKRKQAGHYNYSLSKLEQYDRDHQSNMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ETLERFIEADSNVNTASKLLNIHVNTLNYRLKRISQIAEIDLKNVNQKFTIYLDIKLRHM
HHHHHHHHCCCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC
DL
CC
>Mature Secondary Structure 
SKRNQARKVGRFMTMPNDPFKYSFDRLEDVADHISDVLRCPITIEDVNHKLLAYSTHSD
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCC
CTDPARTSTIIGRRVPEKVINKLWKDGTIPALLKTDQPIRVKQIDEVGLSNRVAISIWKN
CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCEEEEEECC
KQVLGFIWALEIQKTLSDEDLLTLQMAAKAVKNKLLKLQIRKTKNEERSQEFFWKMLTGH
CCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHHHHHCC
IHQEDDMADGFHKLGMAAPSEFSVMIIRINGELTEKIEQQLQYLQETTQQVYVLLATVDS
CCCCCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEECC
NELIILTSPKTDHPFQDLKQFALSTQKQLKERYKIEDVSIAFGGIYNSISFVSRSYQEAL
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
SVLKTKERFAEETKHLFSFSELGIYQYLDVLNEKRKQAGHYNYSLSKLEQYDRDHQSNMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ETLERFIEADSNVNTASKLLNIHVNTLNYRLKRISQIAEIDLKNVNQKFTIYLDIKLRHM
HHHHHHHHCCCCCCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377