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The map label for this gene is ythA

Identifier: 255767701

GI number: 255767701

Start: 3139431

End: 3140762

Strand: Direct

Name: ythA

Synonym: BSU30710

Alternate gene names: 255767701

Gene position: 3139431-3140762 (Clockwise)

Preceding gene: 16080120

Following gene: 16080124

Centisome position: 74.47

GC content: 47.3

Gene sequence:

>1332_bases
GTGGATGATTTAGTTTTGGCCAGAAGCCTTTTTGGCACGACGATGGGCTTTCATATCATTTTCGCAACACTTGGAGTCGG
TCTGCCGCTCATGATTTTAGTGGCGGAATTGATCTATCAAAAAACGAAAGATGACCATTATGCGATCATGGCGAAAAGAT
GGACGAAAGCACAAGCCGTTTTGCTGGGGGTCGCCATACCGACCGGAACGATCGCGGGCACTCAGCTCGCGCTTTTATGG
CCGGGATTTATGGAAGTCATCGGCCGGGTGATGTCCCTGCCATTTCAAATTGAAATCTATGCTTTTTTTGTTGAAGCCCT
ATTCATGTCGATTTATGTATACGCTGCAGACCGTTTGTCACCTGCAATGAGGATTGTTGCTGTTTTCTTTGTGTTAGTCG
GGGCAGCAGCATCCGCTGTTCTGATCACGAATGTTCACGCTTTTGAAGGTACGCCCGCCGGTTTTAAAATTTTAAACGGA
AAAATTACAGATGTTGACCCGTGGGCTGCGTTTTTTAATCCTAGCTTTTTTATCACTGCCGGCCATGTCGTGCTGTCCGC
GTTTATGACTGGTGCGTTTATCGTGGCTTCTGTTGCGGCGTATAAAATGATCCGAACGAGGAAAAAGGAAAGGGTCTATC
GCTTTCACCGGAAAGCCCTTTTGCTCGCACTGACGATCGGCGGTATTTTTTCATTGCTGACCGCTTTGAACGGACACGAA
TCTGCACAGATGCTGTACGAATACCAGCCCGAAAAATTAGCCGGTGCGGAAGGCCTATTTGAAACAAGATCCCACGCCCC
GCTCGCTATCGGCGGTTTTACCGACCCGAATGAAGAAAAAGTAAAATGGGCAATCGAGATTCCATGGGCTTTAAGCTTTT
TGGCAGCGAACCGTTTTGACACTGTTGTAAAAGGATTAAATGCATTTCCGAGAGATGAATGGCCGCCGCTTTTCATTCAC
ACGCTGTTTAATGCGATGGTTGGTGTAGGCATGCTGCTAATTCTTTATTCCATTATCGGTGTGGTCTGGAGAAAGGTGCT
CAAGAAAGACCGTTTCCCAACGTGGCTTTTGATCATTTTCATGACAGCAGGCCCTTTTAGTCTCATCGGCATTGAATTCG
GCTGGATTTTCGCATGTACGGGGAGGCAGCCTTGGGTCATCTATCATCTGCTGAAAACGTCAGATGTCGTAACAACGACT
GGCTCGATCGGGGTGCTGTTCTTATTTTTCACATTTGTTTATGCCGTGTTAGGCGCAGCTGTCGTCTACGTGCTGCTGTA
TTATTTCCGCAAGCACCCGGTTGACGAAGATTTAAATACAGCGGAGTCGTAA

Upstream 100 bases:

>100_bases
CTCATGGCATTTAAGAATAGGAAGAATAATCTAACCGAGGAAGCAAATAATAAACCCAAAATACATACAGAACGTCTTTT
TGGAAAGGTGGTTTACGATT

Downstream 100 bases:

>100_bases
TGGCTCCGCAAACAGGAAACCAAATGGAAGGAAGATCGTACAAATGGAGATTTCAACTGACGCTCTGATCGCCATCTCAA
TTATCTGGGGCTTTGTGTTT

Product: cytochrome d oxidase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAVLLGVAIPTGTIAGTQLALLW
PGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLSPAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNG
KITDVDPWAAFFNPSFFITAGHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHE
SAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFDTVVKGLNAFPRDEWPPLFIH
TLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIFMTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTT
GSIGVLFLFFTFVYAVLGAAVVYVLLYYFRKHPVDEDLNTAES

Sequences:

>Translated_443_residues
MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAVLLGVAIPTGTIAGTQLALLW
PGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLSPAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNG
KITDVDPWAAFFNPSFFITAGHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHE
SAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFDTVVKGLNAFPRDEWPPLFIH
TLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIFMTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTT
GSIGVLFLFFTFVYAVLGAAVVYVLLYYFRKHPVDEDLNTAES
>Mature_443_residues
MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAVLLGVAIPTGTIAGTQLALLW
PGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLSPAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNG
KITDVDPWAAFFNPSFFITAGHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHE
SAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFDTVVKGLNAFPRDEWPPLFIH
TLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIFMTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTT
GSIGVLFLFFTFVYAVLGAAVVYVLLYYFRKHPVDEDLNTAES

Specific function: Probable cytochrome

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family

Homologues:

Organism=Escherichia coli, GI87081779, Length=516, Percent_Identity=23.6434108527132, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787212, Length=324, Percent_Identity=26.2345679012346, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTHA_BACSU (C0SP90)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- RefSeq:   NP_390949.2
- EnsemblBacteria:   EBBACT00000001523
- GeneID:   937142
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30710
- GenoList:   BSU30710
- GeneTree:   EBGT00050000002512
- ProtClustDB:   CLSK872854
- BioCyc:   BSUB:BSU30710-MONOMER
- GO:   GO:0006810
- InterPro:   IPR002585

Pfam domain/function: PF01654 Bac_Ubq_Cox

EC number: 1.10.3.-

Molecular weight: Translated: 49214; Mature: 49214

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11d7a75c)-; HASH(0x119965cc)-; HASH(0x1197d0b0)-; HASH(0x11f41108)-; HASH(0x11b6be4c)-; HASH(0x10698ed8)-; HASH(0x11e8ab5c)-; HASH(0x11e1b7f8)-; HASH(0x11dedf64)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAV
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHE
LLGVAIPTGTIAGTQLALLWPGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLS
EEEEECCCCCCCCCCHHHHCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
PAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNGKITDVDPWAAFFNPSFFITA
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCEECCCCCHHHHHCCCEEEEH
GHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFD
HHHHHHHCCCHHHCCCCCHHHCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHH
TVVKGLNAFPRDEWPPLFIHTLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIF
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHEE
MTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTTGSIGVLFLFFTFVYAVLGAA
CCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHH
VVYVLLYYFRKHPVDEDLNTAES
HHHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure
MDDLVLARSLFGTTMGFHIIFATLGVGLPLMILVAELIYQKTKDDHYAIMAKRWTKAQAV
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHE
LLGVAIPTGTIAGTQLALLWPGFMEVIGRVMSLPFQIEIYAFFVEALFMSIYVYAADRLS
EEEEECCCCCCCCCCHHHHCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
PAMRIVAVFFVLVGAAASAVLITNVHAFEGTPAGFKILNGKITDVDPWAAFFNPSFFITA
HHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCEECCCCCHHHHHCCCEEEEH
GHVVLSAFMTGAFIVASVAAYKMIRTRKKERVYRFHRKALLLALTIGGIFSLLTALNGHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SAQMLYEYQPEKLAGAEGLFETRSHAPLAIGGFTDPNEEKVKWAIEIPWALSFLAANRFD
HHHHHHHCCCHHHCCCCCHHHCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHH
TVVKGLNAFPRDEWPPLFIHTLFNAMVGVGMLLILYSIIGVVWRKVLKKDRFPTWLLIIF
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHEE
MTAGPFSLIGIEFGWIFACTGRQPWVIYHLLKTSDVVTTTGSIGVLFLFFTFVYAVLGAA
CCCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHH
VVYVLLYYFRKHPVDEDLNTAES
HHHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377