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The map label for this gene is ythB

Identifier: 16080124

GI number: 16080124

Start: 3140806

End: 3141846

Strand: Direct

Name: ythB

Synonym: BSU30720

Alternate gene names: 16080124

Gene position: 3140806-3141846 (Clockwise)

Preceding gene: 255767701

Following gene: 255767702

Centisome position: 74.5

GC content: 43.71

Gene sequence:

>1041_bases
ATGGAGATTTCAACTGACGCTCTGATCGCCATCTCAATTATCTGGGGCTTTGTGTTTATTTACGCCGTCATGGCGACAAT
GGATTTTGGAGCGGGATTTTGGTCTATGATCTATTTAAACAAGGAGCATATGAAGGCCACCGATATTGCGAATCGCTTTT
TGTCCCCGACTTGGGAGGTCACAAACGTCTTTATTGTGGCCATCGTCGTGGCGCTTTTCAGTTTTTTCCCCGGCGCGACA
TTTGTGCTCGGCACCGTTTTATTAATTCCCGGAAGCATGATTTTGCTGCTTTTAGCAATTCGAAGCGGATTTCTCGTGTT
TTCAAATACAGCAAAGGAGCGGAAAACGCTAAGATATATTTCCGGCATCTCCGGCTTTATCATTCCTGCTATTTTAATTT
TGGTGCTTCCTGTGACACACGGAGGGTTTATAGAAAAAACGGATGGAATCTATAACTTAAATATGTCTAAAATCTTTTCA
AGCCCCAACGCCTATTCATTTATCGGGTTTGCGATTTTAAGCACCTTATTTTTGTCCTCGCTGTTGCTTGCAGATTTTTC
AAATGTGGCAGAGGAACAGGATGCGTACCGAGCCTACAGAAAAAGCGCCCTGATTACCGGCCCGATTTCACTGTTGTTTG
CTGTATGCATTATGGTAACTATGCGGAATGAAGCAAACTGGCTGTACAGCGGAATGATGAATGATTTTTCTTGGATTATT
GCATCGTTCATTACATTTGTCATTGCTGGAATCGCTCTTTTTCTGCCTAACAAAAGCTTTGGTCAAAACATCGGAAAACC
GCGTCTCGCACTTGTTGCGATTGGGATACAGTATTTTCTCGCAAGCTACGCGTACGGGCGGGCGCATCTTCCGTATATGA
TTTATCCCGATGTGACAGTCATGTCAGGCTTCACAGAGCCAGCAACGTTCAGAGCGCTGTTTGCAACGTATATCGTTGCA
TTTATCATTCTATTTCCGGGCTTCTTTTTCTTCTGGAAAATGTTTATGCGAGATAAACGCTATATCCGCCAGGAGGAATA
G

Upstream 100 bases:

>100_bases
CTGTATTATTTCCGCAAGCACCCGGTTGACGAAGATTTAAATACAGCGGAGTCGTAATGGCTCCGCAAACAGGAAACCAA
ATGGAAGGAAGATCGTACAA

Downstream 100 bases:

>100_bases
AGGGCAAGCCAGCCGGCTATACTAATCCAGAACCTTTATAAGGAGGGGATGGCATGGAGCAGAAAATTCTATGTGAGGTC
AACAACTGTTCTTATTGGGG

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEVTNVFIVAIVVALFSFFPGAT
FVLGTVLLIPGSMILLLLAIRSGFLVFSNTAKERKTLRYISGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFS
SPNAYSFIGFAILSTLFLSSLLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFSWII
ASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYFLASYAYGRAHLPYMIYPDVTVMSGFTEPATFRALFATYIVA
FIILFPGFFFFWKMFMRDKRYIRQEE

Sequences:

>Translated_346_residues
MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEVTNVFIVAIVVALFSFFPGAT
FVLGTVLLIPGSMILLLLAIRSGFLVFSNTAKERKTLRYISGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFS
SPNAYSFIGFAILSTLFLSSLLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFSWII
ASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYFLASYAYGRAHLPYMIYPDVTVMSGFTEPATFRALFATYIVA
FIILFPGFFFFWKMFMRDKRYIRQEE
>Mature_346_residues
MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEVTNVFIVAIVVALFSFFPGAT
FVLGTVLLIPGSMILLLLAIRSGFLVFSNTAKERKTLRYISGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFS
SPNAYSFIGFAILSTLFLSSLLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFSWII
ASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYFLASYAYGRAHLPYMIYPDVTVMSGFTEPATFRALFATYIVA
FIILFPGFFFFWKMFMRDKRYIRQEE

Specific function: Unknown

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTHB_BACSU (O34505)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   A69993
- RefSeq:   NP_390950.1
- ProteinModelPortal:   O34505
- EnsemblBacteria:   EBBACT00000000420
- GeneID:   937206
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30720
- NMPDR:   fig|224308.1.peg.3075
- GenoList:   BSU30720
- GeneTree:   EBGT00070000032115
- HOGENOM:   HBG475681
- OMA:   AGFWSMI
- ProtClustDB:   CLSK872853
- BioCyc:   BSUB:BSU30720-MONOMER
- InterPro:   IPR003317

Pfam domain/function: PF02322 Cyto_ox_2

EC number: 1.10.3.-

Molecular weight: Translated: 38845; Mature: 38845

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1046729c)-; HASH(0x11072a7c)-; HASH(0x1177754c)-; HASH(0x119850f8)-; HASH(0x11cdacf8)-; HASH(0x116be3d0)-; HASH(0xf56b658)-; HASH(0x11b3e3e8)-; HASH(0x11a5636c)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECHHHHHHHHHHHHHCCCCHHH
TNVFIVAIVVALFSFFPGATFVLGTVLLIPGSMILLLLAIRSGFLVFSNTAKERKTLRYI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
SGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFSSPNAYSFIGFAILSTLFLSS
HCCCHHHHHHHHHHHHHCCCCCCEECCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHH
LLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFSWII
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYFLASYAYGRAHLPYMIYPDVTV
HHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHH
MSGFTEPATFRALFATYIVAFIILFPGFFFFWKMFMRDKRYIRQEE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECHHHHHHHHHHHHHCCCCHHH
TNVFIVAIVVALFSFFPGATFVLGTVLLIPGSMILLLLAIRSGFLVFSNTAKERKTLRYI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
SGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFSSPNAYSFIGFAILSTLFLSS
HCCCHHHHHHHHHHHHHCCCCCCEECCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHH
LLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMNDFSWII
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYFLASYAYGRAHLPYMIYPDVTV
HHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHH
MSGFTEPATFRALFATYIVAFIILFPGFFFFWKMFMRDKRYIRQEE
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377