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The map label for this gene is mrnC [H]

Identifier: 239617977

GI number: 239617977

Start: 1721771

End: 1722208

Strand: Reverse

Name: mrnC [H]

Synonym: Kole_1605

Alternate gene names: 239617977

Gene position: 1722208-1721771 (Counterclockwise)

Preceding gene: 239617978

Following gene: 239617976

Centisome position: 74.81

GC content: 41.32

Gene sequence:

>438_bases
TTGTCTGATTTCGAAAATTTTTTTAGAACCGATATAGTACCGGAAGAATTATCGATAGATTCCCTGTCTTTCGTAGGAGA
TGCTGTTTATAGCCTGTATTTCCGTATAAAAACCCTCCGGTCGGCAAAAAGAAGAACAGGATATCAACACAATCTCACGC
TTCTCTACGTCGAAGCAAAAGGCCAGAGAAAAGCACTCGAAGTTATAGAGAAATTTCTTTCAGAAGAAGAGAGAATAATT
GTTCGCAGAGGATATAATTCTCGCGGTGCGAGAAAACGCGGTGATGACGAAAACTATAAATGTGCTACCGCCCTGGAAGC
CCTCGTTGGGTATCTCTTTTTGAAAGGCCGGTATCGTCGTCTGGAGGAACTTCTGGAAAAGGTGGAAAATGATGTATCTT
CATGGAAGAAATGTGCTGAGAGAGATTCTAAAACTTGA

Upstream 100 bases:

>100_bases
GAACTTGGCGGTGGCGGCGGCGGAAGACCCGATTTTGCACAGGCTGGAGGAAAAAAGATTGAACGTGTCGAATGGGTCAT
CAAGAATCTTGAAAAGTTCT

Downstream 100 bases:

>100_bases
ACCAAAAAAACTGAAAATAAAAAAGGTCCTCTTTACGGATCAGAAAAATGTTGACAGGGAGCTCGAGGAGTTGAAAGAAC
ATACAGCTAAAAAAGGTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSDFENFFRTDIVPEELSIDSLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVIEKFLSEEERII
VRRGYNSRGARKRGDDENYKCATALEALVGYLFLKGRYRRLEELLEKVENDVSSWKKCAERDSKT

Sequences:

>Translated_145_residues
MSDFENFFRTDIVPEELSIDSLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVIEKFLSEEERII
VRRGYNSRGARKRGDDENYKCATALEALVGYLFLKGRYRRLEELLEKVENDVSSWKKCAERDSKT
>Mature_144_residues
SDFENFFRTDIVPEELSIDSLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVIEKFLSEEERIIV
RRGYNSRGARKRGDDENYKCATALEALVGYLFLKGRYRRLEELLEKVENDVSSWKKCAERDSKT

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 17005; Mature: 16873

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFENFFRTDIVPEELSIDSLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAK
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
GQRKALEVIEKFLSEEERIIVRRGYNSRGARKRGDDENYKCATALEALVGYLFLKGRYRR
CCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEELLEKVENDVSSWKKCAERDSKT
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDFENFFRTDIVPEELSIDSLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAK
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
GQRKALEVIEKFLSEEERIIVRRGYNSRGARKRGDDENYKCATALEALVGYLFLKGRYRR
CCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LEELLEKVENDVSSWKKCAERDSKT
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]