Click here to switch to the map view.

The map label for this gene is ygiS [C]

Identifier: 239617883

GI number: 239617883

Start: 1620219

End: 1621946

Strand: Reverse

Name: ygiS [C]

Synonym: Kole_1511

Alternate gene names: 239617883

Gene position: 1621946-1620219 (Counterclockwise)

Preceding gene: 239617884

Following gene: 239617882

Centisome position: 70.45

GC content: 50.29

Gene sequence:

>1728_bases
ATGAAGAAACTGTTTGTACTCTTGGCGGTGTTCCTTGTTGCCGCAATGATTGTCGCCGTCGAGCCAGAGTACGCTATTGA
GGACTTTAACGGGAAACCCGGGGGCACTCTCTATCTTTCTACAACTTCCGGTCCCAAGACTCTGAATCCATTCTGGTCTC
AGGAAACAAGCTCCTCAGACATCATTGACTATTTCAGCGATTCTCTGTTCAACTCTGATAACAAAGGGATGCCCACCGTA
CCGGCTCTCGCGACCAAATGGTGGTTCTCCGACGACGGTAAGACGGTTTTCTTCCAGATCAGGAAGGGAATCGTATGGTC
AGATGGTGAACCTTTCACCATCGAAGACGTTTACTGGACCTTCACAAAGGTCGCTCTCGTCGAGGGCATGACTGCCAATG
GACCTGGTGGAGCCATGGACGCCAATGACCAGCTCCCTGTGGTTGAAATCGTTGATGACTACACGATTTCCTTTACATGG
AGCGTCCCGAACGTCTGGGGATTCAAATGGGTCGGTTACACCGGCATTCTTCCCAAACACGTTCTCGAAGAAGCCGTCGA
GAACGGTAAATTCTCCGAAGCCTGGACCGTTGCCGATATCGATAAGATCGTCGGTATGGGGCCATTCCTGCCCGTTGAGT
ACACCGAAGGTGTAAGGGTCGTCCTCGAAAGGAACCCCAACTACTACAGATTCGACAAAAATGGCGTAAGACTGCCTTAC
CTTGACAAGGTTGTTTATCTCATAGTTCCCGACCTCAACACCGAGCTGTTGAAGTTCGAGGCTGGCGAAATCGACCTTTA
CGGTCCAACAGCTGAAAACTTCCCCAGAATCAAGGAACAGGCCGAGGAAAAAGGCTGGGTTGTCGGTGTTGGTGGACCCG
CACTCGGTTCCCAGTTCATCGCCTTCAACTGGGTTACCAAAGATCCTGTTAAGAGAGAATGGTTCAGAAATGAACACTTC
AGAAAAGCCTTTGTTTACATGCTCGACAGAGGCACTCTGATCGAAACCCTCTACAATGGTCTCGGTTCACCACTTTACGG
ACCTGTTAGCCCATCCAGCGGATTCTACTATCCCGAAATCGAGAAGTTCGCCTACAAGTACTCCATCATCAGGGCAAGGC
TCGAACTCAAGAAGGGTGGATTCAGCTGGAATGCAAACGGTGAACTTGTCGACAAAGATGGCAACGTTGTTGAATTCAAC
CTCATGACCAATGCCGGTAACAACGTCCGTGAAGCCATCGGTAACATCCTCGTTGACAGCGCCAAGAAACTCGGTATGAA
GATCAACTTCACCCCGATACAGTTCAACACACTCGTTCAGAAACTCCTCACACCCGACTATGAAGCTATCATCATTGGTC
TCACCGGCTCTGTCGATCCAGGATCCGGATGGAACGTCTGGAGACTCGACGGTGGTCTGCACTTCTGGAACTACTCACCT
GAACTCAGACCCGACACAGTTCCGGAAGAGATATGGTGGAGCCCCGACTGGGAAAAGAGAATCGACGAAATCTTCAGGAT
CCAGACATCCGCGGTTGACGAACAGGAAAGATACAACCTCTTTGCCGAATTCCAGATGATCTGTGCAGAGCATATGCCAC
TGGTTTACACCGTTGCACAGAACTACCTCTACGCTCTTAAGGGCAACATACATCTCGCCAATCCTGAACCCAACCCAGCA
GCTGGCATGCTCTGGAAGGTTTACGGTATCTGGAAAGAAGGGGAATAA

Upstream 100 bases:

>100_bases
TCTGTTCAAAAGAATACCCACCACTATTCAAGGTTTCAGATAACCATTATGTTGCGTGTCATCTCTATTCCACATCTTCT
AAAGAAGGAGGGGAAAAAGC

Downstream 100 bases:

>100_bases
TCCACGGGGGTGACCTCGTGTTTGCGGGAGGGTCATCCCTCCCGCTTTCATTGTCTTTACTGGTTTAAGGAGGGAAGAAG
GTGCTCAGATATATACTTAG

Product: extracellular solute-binding protein family 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MKKLFVLLAVFLVAAMIVAVEPEYAIEDFNGKPGGTLYLSTTSGPKTLNPFWSQETSSSDIIDYFSDSLFNSDNKGMPTV
PALATKWWFSDDGKTVFFQIRKGIVWSDGEPFTIEDVYWTFTKVALVEGMTANGPGGAMDANDQLPVVEIVDDYTISFTW
SVPNVWGFKWVGYTGILPKHVLEEAVENGKFSEAWTVADIDKIVGMGPFLPVEYTEGVRVVLERNPNYYRFDKNGVRLPY
LDKVVYLIVPDLNTELLKFEAGEIDLYGPTAENFPRIKEQAEEKGWVVGVGGPALGSQFIAFNWVTKDPVKREWFRNEHF
RKAFVYMLDRGTLIETLYNGLGSPLYGPVSPSSGFYYPEIEKFAYKYSIIRARLELKKGGFSWNANGELVDKDGNVVEFN
LMTNAGNNVREAIGNILVDSAKKLGMKINFTPIQFNTLVQKLLTPDYEAIIIGLTGSVDPGSGWNVWRLDGGLHFWNYSP
ELRPDTVPEEIWWSPDWEKRIDEIFRIQTSAVDEQERYNLFAEFQMICAEHMPLVYTVAQNYLYALKGNIHLANPEPNPA
AGMLWKVYGIWKEGE

Sequences:

>Translated_575_residues
MKKLFVLLAVFLVAAMIVAVEPEYAIEDFNGKPGGTLYLSTTSGPKTLNPFWSQETSSSDIIDYFSDSLFNSDNKGMPTV
PALATKWWFSDDGKTVFFQIRKGIVWSDGEPFTIEDVYWTFTKVALVEGMTANGPGGAMDANDQLPVVEIVDDYTISFTW
SVPNVWGFKWVGYTGILPKHVLEEAVENGKFSEAWTVADIDKIVGMGPFLPVEYTEGVRVVLERNPNYYRFDKNGVRLPY
LDKVVYLIVPDLNTELLKFEAGEIDLYGPTAENFPRIKEQAEEKGWVVGVGGPALGSQFIAFNWVTKDPVKREWFRNEHF
RKAFVYMLDRGTLIETLYNGLGSPLYGPVSPSSGFYYPEIEKFAYKYSIIRARLELKKGGFSWNANGELVDKDGNVVEFN
LMTNAGNNVREAIGNILVDSAKKLGMKINFTPIQFNTLVQKLLTPDYEAIIIGLTGSVDPGSGWNVWRLDGGLHFWNYSP
ELRPDTVPEEIWWSPDWEKRIDEIFRIQTSAVDEQERYNLFAEFQMICAEHMPLVYTVAQNYLYALKGNIHLANPEPNPA
AGMLWKVYGIWKEGE
>Mature_575_residues
MKKLFVLLAVFLVAAMIVAVEPEYAIEDFNGKPGGTLYLSTTSGPKTLNPFWSQETSSSDIIDYFSDSLFNSDNKGMPTV
PALATKWWFSDDGKTVFFQIRKGIVWSDGEPFTIEDVYWTFTKVALVEGMTANGPGGAMDANDQLPVVEIVDDYTISFTW
SVPNVWGFKWVGYTGILPKHVLEEAVENGKFSEAWTVADIDKIVGMGPFLPVEYTEGVRVVLERNPNYYRFDKNGVRLPY
LDKVVYLIVPDLNTELLKFEAGEIDLYGPTAENFPRIKEQAEEKGWVVGVGGPALGSQFIAFNWVTKDPVKREWFRNEHF
RKAFVYMLDRGTLIETLYNGLGSPLYGPVSPSSGFYYPEIEKFAYKYSIIRARLELKKGGFSWNANGELVDKDGNVVEFN
LMTNAGNNVREAIGNILVDSAKKLGMKINFTPIQFNTLVQKLLTPDYEAIIIGLTGSVDPGSGWNVWRLDGGLHFWNYSP
ELRPDTVPEEIWWSPDWEKRIDEIFRIQTSAVDEQERYNLFAEFQMICAEHMPLVYTVAQNYLYALKGNIHLANPEPNPA
AGMLWKVYGIWKEGE

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=565, Percent_Identity=22.1238938053097, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1789966, Length=400, Percent_Identity=23.5, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787495, Length=334, Percent_Identity=25.4491017964072, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787762, Length=553, Percent_Identity=22.2423146473779, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65075; Mature: 65075

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFVLLAVFLVAAMIVAVEPEYAIEDFNGKPGGTLYLSTTSGPKTLNPFWSQETSSSD
CHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCH
IIDYFSDSLFNSDNKGMPTVPALATKWWFSDDGKTVFFQIRKGIVWSDGEPFTIEDVYWT
HHHHHHHHHCCCCCCCCCCCCHHHEEEEECCCCCEEEEEEECCEEECCCCCEEEHHHHHH
FTKVALVEGMTANGPGGAMDANDQLPVVEIVDDYTISFTWSVPNVWGFKWVGYTGILPKH
HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCHHH
VLEEAVENGKFSEAWTVADIDKIVGMGPFLPVEYTEGVRVVLERNPNYYRFDKNGVRLPY
HHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEEECCCCCCCCH
LDKVVYLIVPDLNTELLKFEAGEIDLYGPTAENFPRIKEQAEEKGWVVGVGGPALGSQFI
HCCEEEEEECCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCEEEECCCHHHCCCEE
AFNWVTKDPVKREWFRNEHFRKAFVYMLDRGTLIETLYNGLGSPLYGPVSPSSGFYYPEI
EEEECCCCCHHHHHHHCHHHHEEEHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
EKFAYKYSIIRARLELKKGGFSWNANGELVDKDGNVVEFNLMTNAGNNVREAIGNILVDS
HHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHH
AKKLGMKINFTPIQFNTLVQKLLTPDYEAIIIGLTGSVDPGSGWNVWRLDGGLHFWNYSP
HHHCCEEEEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCEEEECCCC
ELRPDTVPEEIWWSPDWEKRIDEIFRIQTSAVDEQERYNLFAEFQMICAEHMPLVYTVAQ
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHH
NYLYALKGNIHLANPEPNPAAGMLWKVYGIWKEGE
CEEEEEECCEEECCCCCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MKKLFVLLAVFLVAAMIVAVEPEYAIEDFNGKPGGTLYLSTTSGPKTLNPFWSQETSSSD
CHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCH
IIDYFSDSLFNSDNKGMPTVPALATKWWFSDDGKTVFFQIRKGIVWSDGEPFTIEDVYWT
HHHHHHHHHCCCCCCCCCCCCHHHEEEEECCCCCEEEEEEECCEEECCCCCEEEHHHHHH
FTKVALVEGMTANGPGGAMDANDQLPVVEIVDDYTISFTWSVPNVWGFKWVGYTGILPKH
HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCHHH
VLEEAVENGKFSEAWTVADIDKIVGMGPFLPVEYTEGVRVVLERNPNYYRFDKNGVRLPY
HHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEEECCCCCCCCH
LDKVVYLIVPDLNTELLKFEAGEIDLYGPTAENFPRIKEQAEEKGWVVGVGGPALGSQFI
HCCEEEEEECCCCCEEEEEECCEEEEECCCCCCCHHHHHHHHHCCEEEECCCHHHCCCEE
AFNWVTKDPVKREWFRNEHFRKAFVYMLDRGTLIETLYNGLGSPLYGPVSPSSGFYYPEI
EEEECCCCCHHHHHHHCHHHHEEEHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
EKFAYKYSIIRARLELKKGGFSWNANGELVDKDGNVVEFNLMTNAGNNVREAIGNILVDS
HHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHH
AKKLGMKINFTPIQFNTLVQKLLTPDYEAIIIGLTGSVDPGSGWNVWRLDGGLHFWNYSP
HHHCCEEEEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEECCEEEECCCC
ELRPDTVPEEIWWSPDWEKRIDEIFRIQTSAVDEQERYNLFAEFQMICAEHMPLVYTVAQ
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHH
NYLYALKGNIHLANPEPNPAAGMLWKVYGIWKEGE
CEEEEEECCEEECCCCCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]