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The map label for this gene is ybiR [C]

Identifier: 239617274

GI number: 239617274

Start: 929664

End: 930944

Strand: Reverse

Name: ybiR [C]

Synonym: Kole_0883

Alternate gene names: 239617274

Gene position: 930944-929664 (Counterclockwise)

Preceding gene: 239617275

Following gene: 239617273

Centisome position: 40.44

GC content: 39.11

Gene sequence:

>1281_bases
GTGAGTTATCAAACAGTTGTAGCGGTGTCGATTTTTCTTATTTCCTATTTCTTCCTCATCACCGAACGGCTTAACAGGAT
GCTTGTTGCTTTATTTGGCGCAACCTTCATGCTTATTTTTGGGGTGTTTAGAGATCCTGCAATTGTTTACAAAGAATACG
TTGACTTCAACACCATATTTCTCCTCATAGGAATGATGATCTTCGTAGCCGTTATGAAAAAAAGCGGTATCTTCGAGTAC
TTTGGCGCGTTGGCGCTAAAGCTCTCGAAGGGTAGTATGGTGAAACTATATCTGTATATGGTTAGCGTAGTAGCCCTTGC
TTCCAGTATTCTTGATAACGTTACAACAATCCTTGTTTTTGTTCCTATTACTCTTGCTATCGCTGATGCTGTAGGTCTTG
ACCCATTTCCTTTGGTGCTTGGTGAAATTTTTTCATCAAACATCGGTGGTGCCTTAACGCTTATTGGTGACCCGCCAAAC
ATAATGATAGGTTCCGCTGCGGGGTTGTCTTTTATGGATTTTATTGTCAATCTTGGTCCCGCAATTGTACTCATATTCAT
CGCCACCCATACGATGATAATTTTTCTGCTTAGGAAAAAGCTCAGTGTAGATCTTACAGACGCAAAAGGTATCGAACTAA
CCAAAGCAGTTACTAACAGAAAAAACTTCAGAATATCTATTGTATTACTAGTCATTACGACGTTTCTTTTTCTCTTTCAA
CATGAGTTACATTTAGAAAGTTCAACGATAGCCCTTCTGATGGCAGCGTTATCTCTAACGATTATGGACAGAAAAAATGT
AGAAGCAACTCTGGAAGAAGTAGAATGGTCAACGATATTGTTTTTTATTGGGCTTTTTGTTGTAGTTGGAGGTCTTGAAG
AAACCGGTGTGCTGGAAAATTTTGCACATTTACTTATAAAACTTTCAAGAGGTTCTTACCATCGTACCATGCTCTTTATA
ACAAATGCTTCAGCAGTAATTTCAGCGTTTATAGATAACATCCCTTACACTGCTACGATGATACCTGTAGTAGAATCAAT
GAAAAAAATAAACCCGGAAACCTTTTCAAATCTGAATCCTCTCTGGTGGTCCCTGTCTTTAGGAGCGTGTTTGGGAGGTA
ACGGCACTCCCATCGGAGCATCGGCGAATATCATAGGTCTCGCGGTTCTCAAAAAATATTATGGTAAAGAAATCAGTTTC
GTGAAATTCATGGCTTACGGTATGCTGGTTGTCCTTGTAAGTATGATCATATCCAGTGTATATTTGATGGTAAGATATTA
G

Upstream 100 bases:

>100_bases
TCATTTCGAAAGTTCTAAGGCATACGCGGCGGGATATTCCTGCCGCGTACTTTTTTTGTTGTATAATTGGTTCTGTCAAA
ATTCTTATGGAGATGATAGC

Downstream 100 bases:

>100_bases
TGAAAGTCGAGAACCGAGAATCTGAGATAGCAGCTACGCTGCTGAAGTGCGGAGCTACGCTCCGGACGCTCACGAGGTTG
AGGTTTGCAGACGCTGTGCG

Product: Citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MSYQTVVAVSIFLISYFFLITERLNRMLVALFGATFMLIFGVFRDPAIVYKEYVDFNTIFLLIGMMIFVAVMKKSGIFEY
FGALALKLSKGSMVKLYLYMVSVVALASSILDNVTTILVFVPITLAIADAVGLDPFPLVLGEIFSSNIGGALTLIGDPPN
IMIGSAAGLSFMDFIVNLGPAIVLIFIATHTMIIFLLRKKLSVDLTDAKGIELTKAVTNRKNFRISIVLLVITTFLFLFQ
HELHLESSTIALLMAALSLTIMDRKNVEATLEEVEWSTILFFIGLFVVVGGLEETGVLENFAHLLIKLSRGSYHRTMLFI
TNASAVISAFIDNIPYTATMIPVVESMKKINPETFSNLNPLWWSLSLGACLGGNGTPIGASANIIGLAVLKKYYGKEISF
VKFMAYGMLVVLVSMIISSVYLMVRY

Sequences:

>Translated_426_residues
MSYQTVVAVSIFLISYFFLITERLNRMLVALFGATFMLIFGVFRDPAIVYKEYVDFNTIFLLIGMMIFVAVMKKSGIFEY
FGALALKLSKGSMVKLYLYMVSVVALASSILDNVTTILVFVPITLAIADAVGLDPFPLVLGEIFSSNIGGALTLIGDPPN
IMIGSAAGLSFMDFIVNLGPAIVLIFIATHTMIIFLLRKKLSVDLTDAKGIELTKAVTNRKNFRISIVLLVITTFLFLFQ
HELHLESSTIALLMAALSLTIMDRKNVEATLEEVEWSTILFFIGLFVVVGGLEETGVLENFAHLLIKLSRGSYHRTMLFI
TNASAVISAFIDNIPYTATMIPVVESMKKINPETFSNLNPLWWSLSLGACLGGNGTPIGASANIIGLAVLKKYYGKEISF
VKFMAYGMLVVLVSMIISSVYLMVRY
>Mature_425_residues
SYQTVVAVSIFLISYFFLITERLNRMLVALFGATFMLIFGVFRDPAIVYKEYVDFNTIFLLIGMMIFVAVMKKSGIFEYF
GALALKLSKGSMVKLYLYMVSVVALASSILDNVTTILVFVPITLAIADAVGLDPFPLVLGEIFSSNIGGALTLIGDPPNI
MIGSAAGLSFMDFIVNLGPAIVLIFIATHTMIIFLLRKKLSVDLTDAKGIELTKAVTNRKNFRISIVLLVITTFLFLFQH
ELHLESSTIALLMAALSLTIMDRKNVEATLEEVEWSTILFFIGLFVVVGGLEETGVLENFAHLLIKLSRGSYHRTMLFIT
NASAVISAFIDNIPYTATMIPVVESMKKINPETFSNLNPLWWSLSLGACLGGNGTPIGASANIIGLAVLKKYYGKEISFV
KFMAYGMLVVLVSMIISSVYLMVRY

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=171, Percent_Identity=33.9181286549708, Blast_Score=112, Evalue=7e-25,
Organism=Escherichia coli, GI1787039, Length=261, Percent_Identity=26.0536398467433, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082277, Length=404, Percent_Identity=22.029702970297, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550608, Length=491, Percent_Identity=31.1608961303462, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI62484377, Length=441, Percent_Identity=26.3038548752834, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI85724998, Length=441, Percent_Identity=26.3038548752834, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24656008, Length=432, Percent_Identity=26.3888888888889, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24581759, Length=217, Percent_Identity=31.3364055299539, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28574683, Length=217, Percent_Identity=31.3364055299539, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28574681, Length=217, Percent_Identity=31.3364055299539, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28574685, Length=217, Percent_Identity=31.3364055299539, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28574678, Length=217, Percent_Identity=31.3364055299539, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI19920704, Length=217, Percent_Identity=31.3364055299539, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI221472711, Length=193, Percent_Identity=29.5336787564767, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24581764, Length=193, Percent_Identity=29.5336787564767, Blast_Score=100, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 46896; Mature: 46765

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQTVVAVSIFLISYFFLITERLNRMLVALFGATFMLIFGVFRDPAIVYKEYVDFNTIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHH
LLIGMMIFVAVMKKSGIFEYFGALALKLSKGSMVKLYLYMVSVVALASSILDNVTTILVF
HHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPITLAIADAVGLDPFPLVLGEIFSSNIGGALTLIGDPPNIMIGSAAGLSFMDFIVNLGP
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCH
AIVLIFIATHTMIIFLLRKKLSVDLTDAKGIELTKAVTNRKNFRISIVLLVITTFLFLFQ
HHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHH
HELHLESSTIALLMAALSLTIMDRKNVEATLEEVEWSTILFFIGLFVVVGGLEETGVLEN
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAHLLIKLSRGSYHRTMLFITNASAVISAFIDNIPYTATMIPVVESMKKINPETFSNLNP
HHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCC
LWWSLSLGACLGGNGTPIGASANIIGLAVLKKYYGKEISFVKFMAYGMLVVLVSMIISSV
CEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
YLMVRY
HHHHCC
>Mature Secondary Structure 
SYQTVVAVSIFLISYFFLITERLNRMLVALFGATFMLIFGVFRDPAIVYKEYVDFNTIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHH
LLIGMMIFVAVMKKSGIFEYFGALALKLSKGSMVKLYLYMVSVVALASSILDNVTTILVF
HHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPITLAIADAVGLDPFPLVLGEIFSSNIGGALTLIGDPPNIMIGSAAGLSFMDFIVNLGP
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCH
AIVLIFIATHTMIIFLLRKKLSVDLTDAKGIELTKAVTNRKNFRISIVLLVITTFLFLFQ
HHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHHHHH
HELHLESSTIALLMAALSLTIMDRKNVEATLEEVEWSTILFFIGLFVVVGGLEETGVLEN
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAHLLIKLSRGSYHRTMLFITNASAVISAFIDNIPYTATMIPVVESMKKINPETFSNLNP
HHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCCC
LWWSLSLGACLGGNGTPIGASANIIGLAVLKKYYGKEISFVKFMAYGMLVVLVSMIISSV
CEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
YLMVRY
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]