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The map label for this gene is pdxS [H]

Identifier: 239617197

GI number: 239617197

Start: 855479

End: 856357

Strand: Reverse

Name: pdxS [H]

Synonym: Kole_0804

Alternate gene names: 239617197

Gene position: 856357-855479 (Counterclockwise)

Preceding gene: 239617198

Following gene: 239617196

Centisome position: 37.2

GC content: 44.71

Gene sequence:

>879_bases
ATGGAAGAAAGGGGAACATGGGTAGTAAAAAAAGGTTTTGCTGAAATGTTCAAAAACGGGGTTATCATGGATGTCACAAC
ACCTGAACAGGCTAAGATAGCCCAGGAAGCCGGTGCTGTTGCCGTAATGGCCCTTGAGAGAGTCCCTGCAGACATAAGAA
AAGAAGGCGGCGTAGCGAGAATGGCCGACATCAGACTTATCAAATCGATAATGGAGGCAGTTTCAATACCTGTAATGGCA
AAAGTGAGAATAGGCCATACCGCTGAAGCCAGAATCCTTGAAGCTATTGGCGTTGATTTCATTGATGAATCTGAAGTTCT
CACTCCAGCCGATGATAAATATCACATTGATAAACATCAGTTCAAAGTTCCGTTCGTTTGTGGAGCACGAAATCTTGGAG
AAGCAGTCAGGCGAATTGCTGAAGGTGCTGCGATGATAAGAACCAAAGGTGAAGCTGGTACAGGAAACATTATTGAAGCT
GTAAAACACATGCGTACGGTGAATGAAGAAATAAGAAGAGTACAACTCATGAGTGATGAAGAACTTGTCCATTATGGAAA
AGAAATCGGTGCACCTGTGGAGATATTGAAGCAGGTTCGTGAGCTGGGCAGACTTCCCGTTGTTAACTTTGCCGCCGGTG
GAGTTGCAACTCCTGCTGATGCTGCGCTCATGATGATGCTTGGCGCAGATGGTGTTTTCGTTGGCTCTGGAATCTTTAAA
TCCAAAGATCCGAAAAAAATGGCGAGAGCCATAGTTGATTCAGTTCTTCACTGGGACGATCCCAAAATGCTTGCAAAGAT
TAGTGAAGACATTGGGCAGCCGATGGAAGGTAAAGATATTGAAGAGCTTGATGTTAAACTACAGGAGAGGGGCTGGTAA

Upstream 100 bases:

>100_bases
GTGTGCAAAATACGGCAGGAAAAAGGGAGATACGTCGAGGCTTTCTAAAGTGGAAGTGGATTATTGGAACAATAACAAAT
AGAGAAGAGAGGTGAGTAGT

Downstream 100 bases:

>100_bases
GTTTGAAAATAGGGGTTCTCGGTATCCAGGGAGACATCCAGGAGCACCTTAGAATGATAGAAAAAACGGGAAATGAACCC
CTATGGGTAAAAAGCACTTC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MEERGTWVVKKGFAEMFKNGVIMDVTTPEQAKIAQEAGAVAVMALERVPADIRKEGGVARMADIRLIKSIMEAVSIPVMA
KVRIGHTAEARILEAIGVDFIDESEVLTPADDKYHIDKHQFKVPFVCGARNLGEAVRRIAEGAAMIRTKGEAGTGNIIEA
VKHMRTVNEEIRRVQLMSDEELVHYGKEIGAPVEILKQVRELGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFK
SKDPKKMARAIVDSVLHWDDPKMLAKISEDIGQPMEGKDIEELDVKLQERGW

Sequences:

>Translated_292_residues
MEERGTWVVKKGFAEMFKNGVIMDVTTPEQAKIAQEAGAVAVMALERVPADIRKEGGVARMADIRLIKSIMEAVSIPVMA
KVRIGHTAEARILEAIGVDFIDESEVLTPADDKYHIDKHQFKVPFVCGARNLGEAVRRIAEGAAMIRTKGEAGTGNIIEA
VKHMRTVNEEIRRVQLMSDEELVHYGKEIGAPVEILKQVRELGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFK
SKDPKKMARAIVDSVLHWDDPKMLAKISEDIGQPMEGKDIEELDVKLQERGW
>Mature_292_residues
MEERGTWVVKKGFAEMFKNGVIMDVTTPEQAKIAQEAGAVAVMALERVPADIRKEGGVARMADIRLIKSIMEAVSIPVMA
KVRIGHTAEARILEAIGVDFIDESEVLTPADDKYHIDKHQFKVPFVCGARNLGEAVRRIAEGAAMIRTKGEAGTGNIIEA
VKHMRTVNEEIRRVQLMSDEELVHYGKEIGAPVEILKQVRELGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFK
SKDPKKMARAIVDSVLHWDDPKMLAKISEDIGQPMEGKDIEELDVKLQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=290, Percent_Identity=62.0689655172414, Blast_Score=363, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6323996, Length=293, Percent_Identity=61.7747440273038, Blast_Score=358, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6321049, Length=293, Percent_Identity=61.4334470989761, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31967; Mature: 31967

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERGTWVVKKGFAEMFKNGVIMDVTTPEQAKIAQEAGAVAVMALERVPADIRKEGGVAR
CCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHHCCCCHH
MADIRLIKSIMEAVSIPVMAKVRIGHTAEARILEAIGVDFIDESEVLTPADDKYHIDKHQ
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHH
FKVPFVCGARNLGEAVRRIAEGAAMIRTKGEAGTGNIIEAVKHMRTVNEEIRRVQLMSDE
EECCEEECCHHHHHHHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
ELVHYGKEIGAPVEILKQVRELGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFK
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCC
SKDPKKMARAIVDSVLHWDDPKMLAKISEDIGQPMEGKDIEELDVKLQERGW
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEERGTWVVKKGFAEMFKNGVIMDVTTPEQAKIAQEAGAVAVMALERVPADIRKEGGVAR
CCCCCCCHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHHCCCCHH
MADIRLIKSIMEAVSIPVMAKVRIGHTAEARILEAIGVDFIDESEVLTPADDKYHIDKHQ
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHH
FKVPFVCGARNLGEAVRRIAEGAAMIRTKGEAGTGNIIEAVKHMRTVNEEIRRVQLMSDE
EECCEEECCHHHHHHHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
ELVHYGKEIGAPVEILKQVRELGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFK
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCC
SKDPKKMARAIVDSVLHWDDPKMLAKISEDIGQPMEGKDIEELDVKLQERGW
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]