BacMap

Definition	Kosmotoga olearia TBF 19.5.1, complete genome.
Accession	NC_012785
Length	2,302,126

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The map label for this gene is ydbJ [H]

Identifier: 239617162

GI number: 239617162

Start: 820856

End: 821569

Strand: Reverse

Name: ydbJ [H]

Synonym: Kole_0768

Alternate gene names: 239617162

Gene position: 821569-820856 (Counterclockwise)

Preceding gene: 239617163

Following gene: 239617161

Centisome position: 35.69

GC content: 35.01

Gene sequence:

>714_bases
TTGCGTATGGAAAAAACAGTTGAAAGAATCGAAAAAATTATTTCCATTGAGTCTATTTCCAAAGAAATAAAGGGTAGAAA
TATCCTAAAAAACGTTTCTTTTGATATATTACGCGGAGAAATCCTAGCACTTGTTGGCCCAAATGGTGCGGGAAAAACGA
CTACCGTTCGTTGCTTATCGGGGATTTTCAATATTGATTCCGGTGTGATAAATAAAATGGAGGGTTTAGATATCTCTGTA
ATGCCGGAGAAAGATTTTTTCTGGGAAAAATACACAGGATGGAAGAACATAAAAATATGTTTTGACTATTTCAAAGGAAT
TTTAACTAGGGAAAAGATTGAGTACTACATAAACATGTTAGGCCTTTCAGGATTTCTAACAAAAAAAGTCTACACTTATT
CAAAAGGTACAAAGAGAAAATTATCTTTTGTCCTGGCGCTTTTGAGTGACCCAGATCTTCTGATTCTTGACGAACCTATG
AGTGGTCTTGATCCCCTTTCAAGGAAAAACATGAGAAATCTGATTCTTGAGTTGAACGAAGATGGTAAGAGTATTTTACT
AACATCTCACGATTTGGCAGAAGTTGAGAAACTTGCGGACAGAGTAATCGTGATGAAAGATGGAAAGATATTGGTCGATA
ATTTGATAAACGATACCCTATCAAAATATAAAAGTCTTGAAGATCTGTTCTTTGATATAGTGGGGAGGAATTAG

Upstream 100 bases:

>100_bases
GTGGGTCACTTATTTTAAGGTCAAAAGAGATATTTGAAGATTCATGGGGTTATATAAATCTGCTTGATTCTTTTTCTCAG
TTTTTTGGAGGGAATTATAA

Downstream 100 bases:

>100_bases
TATGGGAAAGATTATACTGCACCCCTGAAGAATTGGACAGGTAAAAAGTAGAGAGATAAAATAAAGGCAAGGGGGTGCAG
TTAATGGCAAAGAAACTCTC

Product: ABC transporter related

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRMEKTVERIEKIISIESISKEIKGRNILKNVSFDILRGEILALVGPNGAGKTTTVRCLSGIFNIDSGVINKMEGLDISV
MPEKDFFWEKYTGWKNIKICFDYFKGILTREKIEYYINMLGLSGFLTKKVYTYSKGTKRKLSFVLALLSDPDLLILDEPM
SGLDPLSRKNMRNLILELNEDGKSILLTSHDLAEVEKLADRVIVMKDGKILVDNLINDTLSKYKSLEDLFFDIVGRN

Sequences:

>Translated_237_residues
MRMEKTVERIEKIISIESISKEIKGRNILKNVSFDILRGEILALVGPNGAGKTTTVRCLSGIFNIDSGVINKMEGLDISV
MPEKDFFWEKYTGWKNIKICFDYFKGILTREKIEYYINMLGLSGFLTKKVYTYSKGTKRKLSFVLALLSDPDLLILDEPM
SGLDPLSRKNMRNLILELNEDGKSILLTSHDLAEVEKLADRVIVMKDGKILVDNLINDTLSKYKSLEDLFFDIVGRN
>Mature_237_residues
MRMEKTVERIEKIISIESISKEIKGRNILKNVSFDILRGEILALVGPNGAGKTTTVRCLSGIFNIDSGVINKMEGLDISV
MPEKDFFWEKYTGWKNIKICFDYFKGILTREKIEYYINMLGLSGFLTKKVYTYSKGTKRKLSFVLALLSDPDLLILDEPM
SGLDPLSRKNMRNLILELNEDGKSILLTSHDLAEVEKLADRVIVMKDGKILVDNLINDTLSKYKSLEDLFFDIVGRN

Specific function: Part Of The Abc Transporter Complex Cysawtp Involved In Sulfate/Thiosulfate Import. Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=31.9444444444444, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=31.9444444444444, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=34.1708542713568, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=36.0406091370558, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=32.843137254902, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI27881501, Length=218, Percent_Identity=30.7339449541284, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI30795238, Length=218, Percent_Identity=30.2752293577982, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=32.5471698113208, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI105990541, Length=199, Percent_Identity=35.1758793969849, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=30.8823529411765, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI150417984, Length=212, Percent_Identity=29.7169811320755, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=31.4285714285714, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI116734710, Length=192, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI27262624, Length=209, Percent_Identity=31.1004784688995, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI27262626, Length=209, Percent_Identity=31.1004784688995, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=30.6976744186047, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787370, Length=238, Percent_Identity=26.0504201680672, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786319, Length=227, Percent_Identity=29.5154185022026, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787792, Length=221, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=29.0909090909091, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=28.5067873303167, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=28.436018957346, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=25.3333333333333, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=24.3119266055046, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789864, Length=233, Percent_Identity=27.0386266094421, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789991, Length=244, Percent_Identity=29.5081967213115, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=25.8215962441315, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=27.8761061946903, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=29.9492385786802, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=26.1802575107296, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082268, Length=219, Percent_Identity=28.7671232876712, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=24.4019138755981, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=26.0162601626016, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=25.4716981132075, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=30.3643724696356, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=28.2608695652174, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=23.7209302325581, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786398, Length=219, Percent_Identity=23.2876712328767, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789962, Length=225, Percent_Identity=29.7777777777778, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=22.1674876847291, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=193, Percent_Identity=27.979274611399, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788210, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786872, Length=242, Percent_Identity=25.2066115702479, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787143, Length=252, Percent_Identity=26.5873015873016, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=26.7543859649123, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=27.0935960591133, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787105, Length=203, Percent_Identity=25.1231527093596, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787089, Length=207, Percent_Identity=24.1545893719807, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790190, Length=207, Percent_Identity=26.5700483091787, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786975, Length=216, Percent_Identity=26.3888888888889, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788053, Length=197, Percent_Identity=24.3654822335025, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787112, Length=215, Percent_Identity=26.046511627907, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=24.537037037037, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787182, Length=199, Percent_Identity=26.6331658291457, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=234, Percent_Identity=24.3589743589744, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787041, Length=219, Percent_Identity=25.1141552511416, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789751, Length=202, Percent_Identity=23.7623762376238, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=224, Percent_Identity=30.8035714285714, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17510237, Length=245, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=32.3232323232323, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71983516, Length=203, Percent_Identity=30.5418719211823, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71983510, Length=203, Percent_Identity=30.5418719211823, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71983523, Length=203, Percent_Identity=30.5418719211823, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI193202878, Length=185, Percent_Identity=31.8918918918919, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71992290, Length=229, Percent_Identity=27.5109170305677, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17538654, Length=215, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6320874, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320296, Length=172, Percent_Identity=29.0697674418605, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221512771, Length=206, Percent_Identity=33.495145631068, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24666092, Length=211, Percent_Identity=33.6492890995261, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24648314, Length=235, Percent_Identity=33.1914893617021, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24643674, Length=195, Percent_Identity=32.8205128205128, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=29.6296296296296, Blast_Score=103, Evalue=7e-23,
Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=29.6296296296296, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI281362751, Length=236, Percent_Identity=28.3898305084746, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24650853, Length=236, Percent_Identity=28.3898305084746, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24650855, Length=236, Percent_Identity=28.3898305084746, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24582014, Length=230, Percent_Identity=28.2608695652174, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24582012, Length=230, Percent_Identity=28.2608695652174, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI85725262, Length=227, Percent_Identity=27.3127753303965, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI221500365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI116007184, Length=192, Percent_Identity=28.6458333333333, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI28573571, Length=210, Percent_Identity=29.0476190476191, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573573, Length=210, Percent_Identity=29.0476190476191, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281363262, Length=206, Percent_Identity=27.6699029126214, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24653245, Length=206, Percent_Identity=27.6699029126214, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24581191, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24581189, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24581193, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24581195, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85726357, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17136662, Length=226, Percent_Identity=26.1061946902655, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574533, Length=201, Percent_Identity=26.865671641791, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161076684, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581617, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581615, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161076682, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643672, Length=200, Percent_Identity=24.5, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.25 [C]

Molecular weight: Translated: 26984; Mature: 26984

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMEKTVERIEKIISIESISKEIKGRNILKNVSFDILRGEILALVGPNGAGKTTTVRCLS
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHCCEEEEEECCCCCCCHHHHHHHH
GIFNIDSGVINKMEGLDISVMPEKDFFWEKYTGWKNIKICFDYFKGILTREKIEYYINML
HHHCCCHHHHHHHCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGFLTKKVYTYSKGTKRKLSFVLALLSDPDLLILDEPMSGLDPLSRKNMRNLILELNE
HHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHEEECC
DGKSILLTSHDLAEVEKLADRVIVMKDGKILVDNLINDTLSKYKSLEDLFFDIVGRN
CCCEEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRMEKTVERIEKIISIESISKEIKGRNILKNVSFDILRGEILALVGPNGAGKTTTVRCLS
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHCCEEEEEECCCCCCCHHHHHHHH
GIFNIDSGVINKMEGLDISVMPEKDFFWEKYTGWKNIKICFDYFKGILTREKIEYYINML
HHHCCCHHHHHHHCCCEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLSGFLTKKVYTYSKGTKRKLSFVLALLSDPDLLILDEPMSGLDPLSRKNMRNLILELNE
HHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHEEECC
DGKSILLTSHDLAEVEKLADRVIVMKDGKILVDNLINDTLSKYKSLEDLFFDIVGRN
CCCEEEEECCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]