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The map label for this gene is hypD2 [H]

Identifier: 239616959

GI number: 239616959

Start: 608094

End: 609110

Strand: Reverse

Name: hypD2 [H]

Synonym: Kole_0557

Alternate gene names: 239616959

Gene position: 609110-608094 (Counterclockwise)

Preceding gene: 239616960

Following gene: 239616958

Centisome position: 26.46

GC content: 43.66

Gene sequence:

>1017_bases
GTGGAAGCTAAGAAGTACAGAGTTATGGAAATTTGCGGGACTCACACTCACGCCCTCATGAGGTATGGGTTAAAAGAGCT
TTACTCAGAGAGACTCGAGCTTGTTTGTGGTCCGGGATGTCCTGTATGTGTCACTTCACAATCCGATATAGACAGGATAC
TTTACCTTTGTGATCTAGGAATGAGAATCTACACTTTCGGTGATCTTATGAAGGTTCCGGGAAAAAATGGGAATTTAAGG
GAGAGAAAAGCTCTTGGTGCTTGCGTGAGAGAGGTGTACAACCCGTTATGGATTGTGGATGATATGAAGAAAGATCCAGC
CAGAGGCGCTGTTTTTGTTGCTATTGGTTTTGAAACCACAGCTCCTCTTATAGCGTCGCTGATTGAAGAAATCGAGAGAG
AAAGAATAGAAAACCTTTACGTATATCTATTGCTCAAACTTATACCGCCGGCGATGGAGGCTCTTCTCGAAGATGAAGAA
AACAAACTCGATGGTTTCATCTGCCCGGGTCATGTTAGCACAATAATAGGTGAGCGACCTTACATAAAGCTGGCAGAGAA
AGTAAAAAAACCATTTGTTATAGCCGGGTTCACACGAGAAGAACTAACCGTTGCGTTGGAAAAGATGTCCGAAATGCTTG
AGAAGAGTGCTTATGGGGTTGTTAATGTTTATGCTTCTGCTGTGAAACCAGAAGGAAATCTCGACGCGCGAGAGAAAATT
AAGAATTTTTTTGAGGTTACAGATACCCTTTGGAGAGGATTGGGCACTATCCCCAATTCAGGATTGAAACTCAGAGAAAA
ATACCGAAGATTCGACGTTATGGCGCATTTTCAAATGGAAAACGTAAGTTCAGAAGATCCATGTCCCTGCGGTGAAGTTC
TTACCGGCAAGATAAAACCTGAAGAATGCCAGCTCTTTGGTACTCTCTGTTTACCGGAAACGCCCGTTGGTCCATGCATG
GTTTCATCAGAAGGGGCCTGTCATGCGAGTTTTCTGTATGGAAGAAAAGGGGAGTGA

Upstream 100 bases:

>100_bases
GGTGATTTTGTACTCGTTCACGCCGGGTTTGCTATACAAACAATCGACACTGAAGCAGCAAGGAAAATATTAGAAATTGC
TGAAAGGATAGATGAAGCTC

Downstream 100 bases:

>100_bases
TAGCTTGAAAGAAAGAATCATAACACTTCACCACAACAGCGGGAAAAAACAGTTTAAGTTACTCAAGCATATAGAGAAAC
TTCTTGGAAGTACTTTGGTT

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEAKKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRIYTFGDLMKVPGKNGNLR
ERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAPLIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEE
NKLDGFICPGHVSTIIGERPYIKLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKI
KNFFEVTDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDPCPCGEVLTGKIKPEECQLFGTLCLPETPVGPCM
VSSEGACHASFLYGRKGE

Sequences:

>Translated_338_residues
MEAKKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRIYTFGDLMKVPGKNGNLR
ERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAPLIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEE
NKLDGFICPGHVSTIIGERPYIKLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKI
KNFFEVTDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDPCPCGEVLTGKIKPEECQLFGTLCLPETPVGPCM
VSSEGACHASFLYGRKGE
>Mature_338_residues
MEAKKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRIYTFGDLMKVPGKNGNLR
ERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAPLIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEE
NKLDGFICPGHVSTIIGERPYIKLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKI
KNFFEVTDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDPCPCGEVLTGKIKPEECQLFGTLCLPETPVGPCM
VSSEGACHASFLYGRKGE

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=337, Percent_Identity=40.6528189910979, Blast_Score=262, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 37909; Mature: 37909

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAKKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCHHHHHHHHHHHCC
MRIYTFGDLMKVPGKNGNLRERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETT
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCH
APLIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEENKLDGFICPGHVSTIIGERP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHCCCC
YIKLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKI
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHH
KNFFEVTDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDPCPCGEVLTGKIKP
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCHHHCCCCCH
EECQLFGTLCLPETPVGPCMVSSEGACHASFLYGRKGE
HHHHEEEEEECCCCCCCCEEECCCCCCEEHEECCCCCC
>Mature Secondary Structure
MEAKKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCHHHHHHHHHHHCC
MRIYTFGDLMKVPGKNGNLRERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETT
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCH
APLIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEENKLDGFICPGHVSTIIGERP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHCCCC
YIKLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKI
HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHH
KNFFEVTDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDPCPCGEVLTGKIKP
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEHHCCCCCCCCCCCHHHCCCCCH
EECQLFGTLCLPETPVGPCMVSSEGACHASFLYGRKGE
HHHHEEEEEECCCCCCCCEEECCCCCCEEHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]