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The map label for this gene is yciR [C]

Identifier: 239616940

GI number: 239616940

Start: 590563

End: 592044

Strand: Reverse

Name: yciR [C]

Synonym: Kole_0538

Alternate gene names: 239616940

Gene position: 592044-590563 (Counterclockwise)

Preceding gene: 239616942

Following gene: 239616934

Centisome position: 25.72

GC content: 34.21

Gene sequence:

>1482_bases
ATGAAAATGAATGAGCTGAATAAATGCTTTTTAAAAAGTAAAAAAATCCAGATTTCAGTGCTGGTAGTTCTTATCTCTAT
TTTGATTATCAGTTCGATCATATGCTACTCTGTTGAATTCAGAACTAAATTGGATGAGTTCAAGCTTTCAGAAAAAAGTA
AAGCTGAAAGTTTTTCAATGATTCTCGAAAAAACCCTGGAAAAAGAAATTGCAGAATTTAAGTTTTTTGCAGGATTACTT
GATTTGAAAATTCTTGACGAAGAAAGAGTGAAGCAGTTATTAATTGCGTTTACTGATTCTAGATTTGAAGATGATCCTGG
AGCCAAAGTTTACATAGTTGATAATTCCGGAAAGGTATTACAAAAACATGCTCAGATATATTGCAAAAAAATCGAGGAAA
TCATACAGGAGTTGATATCCACAAATGCTATAAGTGAATCAACAGAAACGGTTATTGATTTTATTTATATCAGTCCCTTA
AATTTTGAAGAAAAACTTTGGATAACTTTTGGAGCACCGCTTTACAATGGAAAAGATAAAGTGGGTACGATTTTTCTTTT
GCATTCGGAAGATTGGTTAAGAAAAGTGTTCAGGAATTTTTTGAGGAACAACGATCTGGTCTTTGGAGTTTTCTCAAAGA
ATTCAGAAGTTTCTTTTCGTAATTTATACACTGACATACTAGTGCCAATTATCCCAAAGGAAGATATATTAAGAAATGGA
CAAACCCAATGGTTAAGCACTGAAGGGATATGGACTTTAAGCACAATTAAAATAGACAATCTTCTTGAAAATAGAATGAT
AGGTATCTTGACCTTATATCCTGACGCAGAAATCAAAAGAGGGCAGCTAGTAGTTCTTAAACGTATATTTGTTTATGATG
TAGTTTTTCTTGCCATAATTATGATCGGATATGTGATGGCCTCCATCCAACTCAAAGCATTAAAGGAGTTTAAAAATTTG
GAGATTAAACAATCTCAAATAGTAAGAGATCCAATTACAGGATTACTGGAACGCAAAGAATTCTTGAAAACCCTTGACTA
CATGATTGAGTTTTCTGAGAAAGAAAACAAAAAATTGGCGCTAATTTTTCTCGACATCGATGACTTTACCTCGGTAAATC
AGCTTCTTGGTCCGGTTCTTGCTGATAACGTTTTAAAAAGATTTGGGGAGCGTTTGAGGAGAGTTCTCAGAAAAGACGAT
ATTATCGGTAGAGTTGGAGGAGATGAATTCGGAATAATCGCATTGGTTTCAGAAGAAGAAGATGTCGTGAAATTGATCGA
TAAGATCACCGTTTCTATTAAGGACCCCATCGAGCTTGGAAAATTCAAACTCTTTCTGAATGCGACATCAGGAATAGCCA
TGTTTCCAAAAGATGGACACAATCCGGACGTTTTAATGACTAAAGCATTTGAGGCTTTGAGGATCGCTAAATCCTCCGAT
ACCAAAAAGAAGTACAGGTTTTTTGGTGTATTAAATGGTTAA

Upstream 100 bases:

>100_bases
TTGCGCCCTAAATTCACAGTGTTTTGGCATTAATTTGCATTCATAAAATTTAGTCAAACGAACAAGTCTTAAATCCTAAT
CCTATAGAGGAAGGGTCGAA

Downstream 100 bases:

>100_bases
TAACATAGGTTGTAGGTTGTACGGAAAAATCGAGAACCGAGAGCCCGAAAGAATCAAGAGAGCCGCTGCGCGGCAGATAC
GAATCCCTTCGGGATTGTCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MKMNELNKCFLKSKKIQISVLVVLISILIISSIICYSVEFRTKLDEFKLSEKSKAESFSMILEKTLEKEIAEFKFFAGLL
DLKILDEERVKQLLIAFTDSRFEDDPGAKVYIVDNSGKVLQKHAQIYCKKIEEIIQELISTNAISESTETVIDFIYISPL
NFEEKLWITFGAPLYNGKDKVGTIFLLHSEDWLRKVFRNFLRNNDLVFGVFSKNSEVSFRNLYTDILVPIIPKEDILRNG
QTQWLSTEGIWTLSTIKIDNLLENRMIGILTLYPDAEIKRGQLVVLKRIFVYDVVFLAIIMIGYVMASIQLKALKEFKNL
EIKQSQIVRDPITGLLERKEFLKTLDYMIEFSEKENKKLALIFLDIDDFTSVNQLLGPVLADNVLKRFGERLRRVLRKDD
IIGRVGGDEFGIIALVSEEEDVVKLIDKITVSIKDPIELGKFKLFLNATSGIAMFPKDGHNPDVLMTKAFEALRIAKSSD
TKKKYRFFGVLNG

Sequences:

>Translated_493_residues
MKMNELNKCFLKSKKIQISVLVVLISILIISSIICYSVEFRTKLDEFKLSEKSKAESFSMILEKTLEKEIAEFKFFAGLL
DLKILDEERVKQLLIAFTDSRFEDDPGAKVYIVDNSGKVLQKHAQIYCKKIEEIIQELISTNAISESTETVIDFIYISPL
NFEEKLWITFGAPLYNGKDKVGTIFLLHSEDWLRKVFRNFLRNNDLVFGVFSKNSEVSFRNLYTDILVPIIPKEDILRNG
QTQWLSTEGIWTLSTIKIDNLLENRMIGILTLYPDAEIKRGQLVVLKRIFVYDVVFLAIIMIGYVMASIQLKALKEFKNL
EIKQSQIVRDPITGLLERKEFLKTLDYMIEFSEKENKKLALIFLDIDDFTSVNQLLGPVLADNVLKRFGERLRRVLRKDD
IIGRVGGDEFGIIALVSEEEDVVKLIDKITVSIKDPIELGKFKLFLNATSGIAMFPKDGHNPDVLMTKAFEALRIAKSSD
TKKKYRFFGVLNG
>Mature_493_residues
MKMNELNKCFLKSKKIQISVLVVLISILIISSIICYSVEFRTKLDEFKLSEKSKAESFSMILEKTLEKEIAEFKFFAGLL
DLKILDEERVKQLLIAFTDSRFEDDPGAKVYIVDNSGKVLQKHAQIYCKKIEEIIQELISTNAISESTETVIDFIYISPL
NFEEKLWITFGAPLYNGKDKVGTIFLLHSEDWLRKVFRNFLRNNDLVFGVFSKNSEVSFRNLYTDILVPIIPKEDILRNG
QTQWLSTEGIWTLSTIKIDNLLENRMIGILTLYPDAEIKRGQLVVLKRIFVYDVVFLAIIMIGYVMASIQLKALKEFKNL
EIKQSQIVRDPITGLLERKEFLKTLDYMIEFSEKENKKLALIFLDIDDFTSVNQLLGPVLADNVLKRFGERLRRVLRKDD
IIGRVGGDEFGIIALVSEEEDVVKLIDKITVSIKDPIELGKFKLFLNATSGIAMFPKDGHNPDVLMTKAFEALRIAKSSD
TKKKYRFFGVLNG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=148, Percent_Identity=27.027027027027, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=192, Percent_Identity=28.125, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1788381, Length=142, Percent_Identity=26.056338028169, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786584, Length=141, Percent_Identity=26.241134751773, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787262, Length=113, Percent_Identity=28.3185840707965, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56622; Mature: 56622

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMNELNKCFLKSKKIQISVLVVLISILIISSIICYSVEFRTKLDEFKLSEKSKAESFSM
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ILEKTLEKEIAEFKFFAGLLDLKILDEERVKQLLIAFTDSRFEDDPGAKVYIVDNSGKVL
HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHH
QKHAQIYCKKIEEIIQELISTNAISESTETVIDFIYISPLNFEEKLWITFGAPLYNGKDK
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCCEEEEEECCCCCCCCCC
VGTIFLLHSEDWLRKVFRNFLRNNDLVFGVFSKNSEVSFRNLYTDILVPIIPKEDILRNG
EEEEEEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHEECCCCHHHHCCC
QTQWLSTEGIWTLSTIKIDNLLENRMIGILTLYPDAEIKRGQLVVLKRIFVYDVVFLAII
CCCEEECCCEEEEEEEEHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
MIGYVMASIQLKALKEFKNLEIKQSQIVRDPITGLLERKEFLKTLDYMIEFSEKENKKLA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LIFLDIDDFTSVNQLLGPVLADNVLKRFGERLRRVLRKDDIIGRVGGDEFGIIALVSEEE
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCH
DVVKLIDKITVSIKDPIELGKFKLFLNATSGIAMFPKDGHNPDVLMTKAFEALRIAKSSD
HHHHHHHHHHEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCEEHHHHHHHHHHHCCCC
TKKKYRFFGVLNG
CCCEEEEEEEECC
>Mature Secondary Structure
MKMNELNKCFLKSKKIQISVLVVLISILIISSIICYSVEFRTKLDEFKLSEKSKAESFSM
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ILEKTLEKEIAEFKFFAGLLDLKILDEERVKQLLIAFTDSRFEDDPGAKVYIVDNSGKVL
HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHH
QKHAQIYCKKIEEIIQELISTNAISESTETVIDFIYISPLNFEEKLWITFGAPLYNGKDK
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCCEEEEEECCCCCCCCCC
VGTIFLLHSEDWLRKVFRNFLRNNDLVFGVFSKNSEVSFRNLYTDILVPIIPKEDILRNG
EEEEEEEECHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHEECCCCHHHHCCC
QTQWLSTEGIWTLSTIKIDNLLENRMIGILTLYPDAEIKRGQLVVLKRIFVYDVVFLAII
CCCEEECCCEEEEEEEEHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
MIGYVMASIQLKALKEFKNLEIKQSQIVRDPITGLLERKEFLKTLDYMIEFSEKENKKLA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LIFLDIDDFTSVNQLLGPVLADNVLKRFGERLRRVLRKDDIIGRVGGDEFGIIALVSEEE
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCH
DVVKLIDKITVSIKDPIELGKFKLFLNATSGIAMFPKDGHNPDVLMTKAFEALRIAKSSD
HHHHHHHHHHEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCEEHHHHHHHHHHHCCCC
TKKKYRFFGVLNG
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]