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The map label for this gene is yecS [H]

Identifier: 239616534

GI number: 239616534

Start: 141322

End: 141996

Strand: Direct

Name: yecS [H]

Synonym: Kole_0126

Alternate gene names: 239616534

Gene position: 141322-141996 (Clockwise)

Preceding gene: 239616533

Following gene: 239616535

Centisome position: 6.14

GC content: 43.7

Gene sequence:

>675_bases
ATGATTGAAAGAATCATAGATATAATAATAAAGTTCTGGCCTGAATTTTTAAGGGGTCTCGGTGTCACTCTCGAAATGAC
CCTTATCTCCGTTGTAGCGGGTTTTTTAATAGGAATACTCCTCGCTCTGGCCAGGGTTTATGGCAATGCTTTATTAAAGG
GGATTGCCACGGTAATCATCGAAGTCATTCGGGGTACGCCACTGCTGGTTCAACTCTTCATTCTTTATTATGGCCTTCCG
CCTTACGGTGTTTCCTTGACACCCTTGACAGCTGCCCTCATAGGATTCTCCATAAACAGCGGCGCGTACCAGGCAGAATA
TTTGAGAAGTGCCATAAATTCGATCCAACATACTCAAATGCTCGCCGCGCGATCTCTGGGCATGACAAAATGGCAGGCAA
TCTTCAATATAATTCTGCCTCAGGCCCTAAGACGGGTAATACCCGCGTGGGCCAACGAGTTCATCTACCTTTTGAAATAT
ACTTCATTGGCTTACATCGTTGGTGCGCCAGAGCTGATGGCTAAAGCTAAGTTTATAGCCAGCAGAAACTTTCAATTTTT
TGAGGTTTATCTGGTTGTTGCTTTAATTTACCTTATTGTCGTTCTTGCTTTCACGAAAATCCTGACAACGGTGGAGAAAA
AAGTCCGTATACCTGGTTTAGAATGGAGTAGATAG

Upstream 100 bases:

>100_bases
TGGAACAGGGGCCACCAGAAGAATTGTTCAGCAATCCTAAACACGAACGAACGAGGCAGTTCCTGTTTAAATTAACGGAG
CTCTACGGGGATGGTGGCGG

Downstream 100 bases:

>100_bases
CATATCACTGGAGGTGTCAGACTTGGTAATTATCAATGGTAACGACCTAACAGTCGAACAAGTCTACTCCGTTGCCTTTC
ATGGTGAAGAAGTCAGGATA

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MIERIIDIIIKFWPEFLRGLGVTLEMTLISVVAGFLIGILLALARVYGNALLKGIATVIIEVIRGTPLLVQLFILYYGLP
PYGVSLTPLTAALIGFSINSGAYQAEYLRSAINSIQHTQMLAARSLGMTKWQAIFNIILPQALRRVIPAWANEFIYLLKY
TSLAYIVGAPELMAKAKFIASRNFQFFEVYLVVALIYLIVVLAFTKILTTVEKKVRIPGLEWSR

Sequences:

>Translated_224_residues
MIERIIDIIIKFWPEFLRGLGVTLEMTLISVVAGFLIGILLALARVYGNALLKGIATVIIEVIRGTPLLVQLFILYYGLP
PYGVSLTPLTAALIGFSINSGAYQAEYLRSAINSIQHTQMLAARSLGMTKWQAIFNIILPQALRRVIPAWANEFIYLLKY
TSLAYIVGAPELMAKAKFIASRNFQFFEVYLVVALIYLIVVLAFTKILTTVEKKVRIPGLEWSR
>Mature_224_residues
MIERIIDIIIKFWPEFLRGLGVTLEMTLISVVAGFLIGILLALARVYGNALLKGIATVIIEVIRGTPLLVQLFILYYGLP
PYGVSLTPLTAALIGFSINSGAYQAEYLRSAINSIQHTQMLAARSLGMTKWQAIFNIILPQALRRVIPAWANEFIYLLKY
TSLAYIVGAPELMAKAKFIASRNFQFFEVYLVVALIYLIVVLAFTKILTTVEKKVRIPGLEWSR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=40.9302325581395, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=37.8640776699029, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1788645, Length=229, Percent_Identity=29.6943231441048, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786873, Length=209, Percent_Identity=32.0574162679426, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=28.7037037037037, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786874, Length=214, Percent_Identity=27.1028037383178, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=33.0049261083744, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=23.0769230769231, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788646, Length=209, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48994930, Length=165, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25070; Mature: 25070

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERIIDIIIKFWPEFLRGLGVTLEMTLISVVAGFLIGILLALARVYGNALLKGIATVII
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIRGTPLLVQLFILYYGLPPYGVSLTPLTAALIGFSINSGAYQAEYLRSAINSIQHTQM
HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAARSLGMTKWQAIFNIILPQALRRVIPAWANEFIYLLKYTSLAYIVGAPELMAKAKFIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SRNFQFFEVYLVVALIYLIVVLAFTKILTTVEKKVRIPGLEWSR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIERIIDIIIKFWPEFLRGLGVTLEMTLISVVAGFLIGILLALARVYGNALLKGIATVII
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVIRGTPLLVQLFILYYGLPPYGVSLTPLTAALIGFSINSGAYQAEYLRSAINSIQHTQM
HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAARSLGMTKWQAIFNIILPQALRRVIPAWANEFIYLLKYTSLAYIVGAPELMAKAKFIA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
SRNFQFFEVYLVVALIYLIVVLAFTKILTTVEKKVRIPGLEWSR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]