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The map label for this gene is ymdC [C]

Identifier: 238925637

GI number: 238925637

Start: 3128365

End: 3129798

Strand: Reverse

Name: ymdC [C]

Synonym: EUBREC_3294

Alternate gene names: 238925637

Gene position: 3129798-3128365 (Counterclockwise)

Preceding gene: 238925638

Following gene: 238925636

Centisome position: 90.73

GC content: 36.54

Gene sequence:

>1434_bases
ATGAAAAGGCATAAAATATGTAAAATTATTTTTGCTATACTGGCAGTTTTTTTATGTGTGGCTTTTTATGAGTTAATCGG
AATCTGCATCACATATAAAAAACAGCCGGCGGTGTCTGATGCTACTATAAAGGAAACACAAAATATTATGAGTGTGGCGG
GGAGAGAGAATACGGAAAGAGCAGTAATCATTGAAAAAAATTCGCAGGCTCTTTTAGAAAGAGTTAGATTAATCCAAAAT
GCAAAGGATGAAATAATCCTTTCTACATTTGCATTTAAATCAGACGAAAGCGGAAAATTGATTTTAGGAGCACTGCATGA
TGCGGCAGACAGAGGCGTACATGTCCGCATATTGGTAGATGGAATGGAGAGCTGGATTGATATGGAGGGTAATCCATATT
TTTATGGATTATCTTCGCATGAGAATGTTGAGATTAAGCTGTACAATAAAGCAAATCCGCTTAAGCCATGGAAGACAATG
GGAAGAATGCATGATAAATATCTGATTGCAGATGGTAAAATATATATTCTTGGCGGAAGAAACACATATAATTATTTTTT
GGGTGATTTTCCGGGGCATAAAAATTTTGACCGGGATGTGTTAGTTGTCTGCGATGAGCCACAGAAAGATAATTCGGTCA
ATCAGCTTTGGAATTATTTTGAAACAATATGGGAACAGGAGGACTGTCGGTATTTTCATAACAGTAAAAAATTAGCTGAC
AGACAATCTGTAAAGAAAGCAGTTTTAGAGCTGCAGGAAGGGTATCAGCAATATTTTGAAGTTAATAAGGAAAAAATTTG
TGATACAGATTATGCGGATGAAACCTTTGAAACAGAAAAGATTACATTGTTATCAAACCCAATCCACACCCAAGCTAAGG
AACCGGTGGTATGGTATCAGCTGGGAGAATTAATGAAAAATGCAAAGGAACGCGTAAAAATTCATACACCATATATTATT
TGCAATGATATGATGTATAATACATGGGAGGAAATTGCACAGAAGGTTCCGGACTTTTCTATTATGACAAATTCTGTTGC
AAATAACGGAAATCCATTTGGAGCTGCTGATTATGCCAAAAACAGAAACAGAATTTTAGAAACAGGAATTGATATCTGGG
AATATGAAGGCGGTTATTCGTATCATGGAAAAAGTATTCTGATTGACGATGATCTGTCAGTAATAGGTTCATTCAATATG
GACATGAGAAGTACTTATCTGGATACAGAGCTGATGCTTGTAATACGCAGTAAAGAGATTAATAAACAGCTGGAGGATGG
CATGATGGAGTATGAGAGCGTGTCCAGACAGGTATTAGACGACGGAACATATTATGATCCGTATCATGTAAAGCCGATTG
AATTAACAGAAAAACGTAAAAGAAAGGTGTTTCTGGTACAGCATCTGCTTGGATGGGCAAGGGATTTGTTTTGA

Upstream 100 bases:

>100_bases
TTTTTCCTGTTTTTTTGCATAAAATCAATTCTGTTGAGGTAAAATTGAGATTGACATTGTATTGTATGAGTATAAAATAC
AAGGAATCAGGTGATGTACA

Downstream 100 bases:

>100_bases
TTAAAGGAGAACATAAAGCGTGTTTAAGATATTAATTGTAGAAGATGATAAGGAATTAAGTCTGTTATTCCAAAAGGTGC
TTGAAAAGAGCGGATATCAG

Product: possible phospholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MKRHKICKIIFAILAVFLCVAFYELIGICITYKKQPAVSDATIKETQNIMSVAGRENTERAVIIEKNSQALLERVRLIQN
AKDEIILSTFAFKSDESGKLILGALHDAADRGVHVRILVDGMESWIDMEGNPYFYGLSSHENVEIKLYNKANPLKPWKTM
GRMHDKYLIADGKIYILGGRNTYNYFLGDFPGHKNFDRDVLVVCDEPQKDNSVNQLWNYFETIWEQEDCRYFHNSKKLAD
RQSVKKAVLELQEGYQQYFEVNKEKICDTDYADETFETEKITLLSNPIHTQAKEPVVWYQLGELMKNAKERVKIHTPYII
CNDMMYNTWEEIAQKVPDFSIMTNSVANNGNPFGAADYAKNRNRILETGIDIWEYEGGYSYHGKSILIDDDLSVIGSFNM
DMRSTYLDTELMLVIRSKEINKQLEDGMMEYESVSRQVLDDGTYYDPYHVKPIELTEKRKRKVFLVQHLLGWARDLF

Sequences:

>Translated_477_residues
MKRHKICKIIFAILAVFLCVAFYELIGICITYKKQPAVSDATIKETQNIMSVAGRENTERAVIIEKNSQALLERVRLIQN
AKDEIILSTFAFKSDESGKLILGALHDAADRGVHVRILVDGMESWIDMEGNPYFYGLSSHENVEIKLYNKANPLKPWKTM
GRMHDKYLIADGKIYILGGRNTYNYFLGDFPGHKNFDRDVLVVCDEPQKDNSVNQLWNYFETIWEQEDCRYFHNSKKLAD
RQSVKKAVLELQEGYQQYFEVNKEKICDTDYADETFETEKITLLSNPIHTQAKEPVVWYQLGELMKNAKERVKIHTPYII
CNDMMYNTWEEIAQKVPDFSIMTNSVANNGNPFGAADYAKNRNRILETGIDIWEYEGGYSYHGKSILIDDDLSVIGSFNM
DMRSTYLDTELMLVIRSKEINKQLEDGMMEYESVSRQVLDDGTYYDPYHVKPIELTEKRKRKVFLVQHLLGWARDLF
>Mature_477_residues
MKRHKICKIIFAILAVFLCVAFYELIGICITYKKQPAVSDATIKETQNIMSVAGRENTERAVIIEKNSQALLERVRLIQN
AKDEIILSTFAFKSDESGKLILGALHDAADRGVHVRILVDGMESWIDMEGNPYFYGLSSHENVEIKLYNKANPLKPWKTM
GRMHDKYLIADGKIYILGGRNTYNYFLGDFPGHKNFDRDVLVVCDEPQKDNSVNQLWNYFETIWEQEDCRYFHNSKKLAD
RQSVKKAVLELQEGYQQYFEVNKEKICDTDYADETFETEKITLLSNPIHTQAKEPVVWYQLGELMKNAKERVKIHTPYII
CNDMMYNTWEEIAQKVPDFSIMTNSVANNGNPFGAADYAKNRNRILETGIDIWEYEGGYSYHGKSILIDDDLSVIGSFNM
DMRSTYLDTELMLVIRSKEINKQLEDGMMEYESVSRQVLDDGTYYDPYHVKPIELTEKRKRKVFLVQHLLGWARDLF

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=414, Percent_Identity=24.3961352657005, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787502, Length=154, Percent_Identity=32.4675324675325, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55385; Mature: 55385

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHKICKIIFAILAVFLCVAFYELIGICITYKKQPAVSDATIKETQNIMSVAGRENTER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCCCE
AVIIEKNSQALLERVRLIQNAKDEIILSTFAFKSDESGKLILGALHDAADRGVHVRILVD
EEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCCEEEEEEEE
GMESWIDMEGNPYFYGLSSHENVEIKLYNKANPLKPWKTMGRMHDKYLIADGKIYILGGR
CHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEECCEEEEEECC
NTYNYFLGDFPGHKNFDRDVLVVCDEPQKDNSVNQLWNYFETIWEQEDCRYFHNSKKLAD
CEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHH
RQSVKKAVLELQEGYQQYFEVNKEKICDTDYADETFETEKITLLSNPIHTQAKEPVVWYQ
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
LGELMKNAKERVKIHTPYIICNDMMYNTWEEIAQKVPDFSIMTNSVANNGNPFGAADYAK
HHHHHHHHHHCEEEECCEEEECCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCCHHHHH
NRNRILETGIDIWEYEGGYSYHGKSILIDDDLSVIGSFNMDMRSTYLDTELMLVIRSKEI
CCCHHHHCCCCEEEECCCCEECCCEEEEECCCHHHCCCCCCHHHHHCCCEEEEEEECHHH
NKQLEDGMMEYESVSRQVLDDGTYYDPYHVKPIELTEKRKRKVFLVQHLLGWARDLF
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRHKICKIIFAILAVFLCVAFYELIGICITYKKQPAVSDATIKETQNIMSVAGRENTER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCCCCE
AVIIEKNSQALLERVRLIQNAKDEIILSTFAFKSDESGKLILGALHDAADRGVHVRILVD
EEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHCCCEEEEEEEE
GMESWIDMEGNPYFYGLSSHENVEIKLYNKANPLKPWKTMGRMHDKYLIADGKIYILGGR
CHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEECCEEEEEECC
NTYNYFLGDFPGHKNFDRDVLVVCDEPQKDNSVNQLWNYFETIWEQEDCRYFHNSKKLAD
CEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHH
RQSVKKAVLELQEGYQQYFEVNKEKICDTDYADETFETEKITLLSNPIHTQAKEPVVWYQ
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
LGELMKNAKERVKIHTPYIICNDMMYNTWEEIAQKVPDFSIMTNSVANNGNPFGAADYAK
HHHHHHHHHHCEEEECCEEEECCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCCHHHHH
NRNRILETGIDIWEYEGGYSYHGKSILIDDDLSVIGSFNMDMRSTYLDTELMLVIRSKEI
CCCHHHHCCCCEEEECCCCEECCCEEEEECCCHHHCCCCCCHHHHHCCCEEEEEEECHHH
NKQLEDGMMEYESVSRQVLDDGTYYDPYHVKPIELTEKRKRKVFLVQHLLGWARDLF
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]