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The map label for this gene is ybbK [C]

Identifier: 238925605

GI number: 238925605

Start: 3100534

End: 3101469

Strand: Reverse

Name: ybbK [C]

Synonym: EUBREC_3261

Alternate gene names: 238925605

Gene position: 3101469-3100534 (Counterclockwise)

Preceding gene: 238925606

Following gene: 238925604

Centisome position: 89.91

GC content: 47.01

Gene sequence:

>936_bases
ATGGAAGGATTAATAGCACTTGCAGTGTTACTCGTAATCGTACTTATAGTACTGGTAAACTGCATCAAAATCGTGCCACA
GGCACATGCAATGGTAATTGAGCGTTTGGGAGGATATCTCACCACATGGAGCGTAGGACTTCACCTCAAGGTGCCATTTA
TCGACAGAATAGCAAAGAAAGTCATCTTAAAGGAGCAGGTGGTAGATTTCCCGCCACAGCCTGTAATCACAAAGGATAAT
GTAACAATGCAGATAGACACTGTAGTATATTTCCAGATTACAGATCCAAAGCTTTACGCATACGGAGTAGAGAATCCAAT
CATGGCAATTGAGAACCTCACAGCCACAACACTTCGTAACATCATCGGAGACTTAGAGCTTGATGAGACACTTACCAGCC
GTGAGACAATCAACACCAAGATGCGCGCAACACTCGATGTGGCAACAGATCCATGGGGCATCAAGGTAAACCGTGTCGAG
CTCAAGAACATCATACCTCCAAAGGCCATCCAGGATGCCATGGAGAAGCAGATGAAGGCAGAGCGTGAGAGAAGAGAGGC
CATTCTTCGTGCAGAGGGTGAGAAAAAATCAACAATCCTTGTTGCAGAGGGAAATAAAGAGTCAGTCATCCTCGATGCCG
AGGCTGAAAAGCAGGCAGCCATCCTTCGCGCAGAGGCAAAGAAGGAGGCAACAATCCAGGAGGCAGCAGGTCAGGCAGAG
GCTATCCTCAAGATACAGCAGGCCAATGCAGACGGACTTCGCATGTTAAAGGAGGCAAATCCGGATAACGCAGTGCTCCA
GATAAAGAGCTTAGAGGCATTTGCCAAGGCAGCAGACGGCAAGGCTACAAAGATTATCATCCCATCAGAGATTCAGGGGA
TTGCAGGTCTTACAAAGTCAATTGCAGAAATAGCTGCGGATAAGACTGAGAAGTAA

Upstream 100 bases:

>100_bases
GGACGAGACCCAGGTCATAAGAAAAGGCGAGCTTATCGAGGTAGTAAAGATAAGCGGAGTAAAACTAATTGTAAAAAGGG
TAAAGGAGGCTTAATCGGAT

Downstream 100 bases:

>100_bases
TTATAGTTAATTAAAATGAATACCGGAAGATGAGAGCACACAAAAAGCATCGCATGTATCATATTAATATCAGATATATG
CGGTGCTTTTTAGATTGCAT

Product: membrane protease subunits, stomatin/prohibitin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEGLIALAVLLVIVLIVLVNCIKIVPQAHAMVIERLGGYLTTWSVGLHLKVPFIDRIAKKVILKEQVVDFPPQPVITKDN
VTMQIDTVVYFQITDPKLYAYGVENPIMAIENLTATTLRNIIGDLELDETLTSRETINTKMRATLDVATDPWGIKVNRVE
LKNIIPPKAIQDAMEKQMKAERERREAILRAEGEKKSTILVAEGNKESVILDAEAEKQAAILRAEAKKEATIQEAAGQAE
AILKIQQANADGLRMLKEANPDNAVLQIKSLEAFAKAADGKATKIIIPSEIQGIAGLTKSIAEIAADKTEK

Sequences:

>Translated_311_residues
MEGLIALAVLLVIVLIVLVNCIKIVPQAHAMVIERLGGYLTTWSVGLHLKVPFIDRIAKKVILKEQVVDFPPQPVITKDN
VTMQIDTVVYFQITDPKLYAYGVENPIMAIENLTATTLRNIIGDLELDETLTSRETINTKMRATLDVATDPWGIKVNRVE
LKNIIPPKAIQDAMEKQMKAERERREAILRAEGEKKSTILVAEGNKESVILDAEAEKQAAILRAEAKKEATIQEAAGQAE
AILKIQQANADGLRMLKEANPDNAVLQIKSLEAFAKAADGKATKIIIPSEIQGIAGLTKSIAEIAADKTEK
>Mature_311_residues
MEGLIALAVLLVIVLIVLVNCIKIVPQAHAMVIERLGGYLTTWSVGLHLKVPFIDRIAKKVILKEQVVDFPPQPVITKDN
VTMQIDTVVYFQITDPKLYAYGVENPIMAIENLTATTLRNIIGDLELDETLTSRETINTKMRATLDVATDPWGIKVNRVE
LKNIIPPKAIQDAMEKQMKAERERREAILRAEGEKKSTILVAEGNKESVILDAEAEKQAAILRAEAKKEATIQEAAGQAE
AILKIQQANADGLRMLKEANPDNAVLQIKSLEAFAKAADGKATKIIIPSEIQGIAGLTKSIAEIAADKTEK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=273, Percent_Identity=38.8278388278388, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI38016911, Length=237, Percent_Identity=35.8649789029536, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI21686995, Length=199, Percent_Identity=37.1859296482412, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI221316744, Length=199, Percent_Identity=37.1859296482412, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1786697, Length=309, Percent_Identity=39.8058252427184, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1790616, Length=205, Percent_Identity=25.8536585365854, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564147, Length=242, Percent_Identity=37.603305785124, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17569493, Length=194, Percent_Identity=36.5979381443299, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI193209764, Length=194, Percent_Identity=36.5979381443299, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71987612, Length=199, Percent_Identity=39.6984924623116, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI25153583, Length=199, Percent_Identity=39.6984924623116, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71987621, Length=199, Percent_Identity=39.1959798994975, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17569499, Length=203, Percent_Identity=35.9605911330049, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17569497, Length=209, Percent_Identity=33.9712918660287, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI32566490, Length=199, Percent_Identity=36.6834170854271, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17570459, Length=200, Percent_Identity=37.5, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71989948, Length=184, Percent_Identity=36.4130434782609, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=36.4130434782609, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI193210507, Length=200, Percent_Identity=36, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17570161, Length=200, Percent_Identity=36, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71989963, Length=123, Percent_Identity=34.1463414634146, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45550506, Length=277, Percent_Identity=37.1841155234657, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI18860517, Length=209, Percent_Identity=39.2344497607655, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI62484448, Length=237, Percent_Identity=38.8185654008439, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI281365664, Length=237, Percent_Identity=38.8185654008439, Blast_Score=124, Evalue=9e-29,
Organism=Drosophila melanogaster, GI24657857, Length=237, Percent_Identity=38.8185654008439, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI62484274, Length=237, Percent_Identity=38.8185654008439, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI45556022, Length=205, Percent_Identity=38.0487804878049, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21356845, Length=195, Percent_Identity=31.7948717948718, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI28573263, Length=205, Percent_Identity=32.1951219512195, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI281361633, Length=206, Percent_Identity=31.0679611650485, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281361631, Length=206, Percent_Identity=31.0679611650485, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281361635, Length=143, Percent_Identity=32.1678321678322, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34101; Mature: 34101

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGLIALAVLLVIVLIVLVNCIKIVPQAHAMVIERLGGYLTTWSVGLHLKVPFIDRIAKK
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEEEEEEECHHHHHHHHH
VILKEQVVDFPPQPVITKDNVTMQIDTVVYFQITDPKLYAYGVENPIMAIENLTATTLRN
HHHHHHHHCCCCCCEEECCCEEEEEEEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHH
IIGDLELDETLTSRETINTKMRATLDVATDPWGIKVNRVELKNIIPPKAIQDAMEKQMKA
HHCCCCHHHHHHHHHHHCHHHEEEEEECCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHH
ERERREAILRAEGEKKSTILVAEGNKESVILDAEAEKQAAILRAEAKKEATIQEAAGQAE
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHH
AILKIQQANADGLRMLKEANPDNAVLQIKSLEAFAKAADGKATKIIIPSEIQGIAGLTKS
HHEEEECCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
IAEIAADKTEK
HHHHHHCCCCC
>Mature Secondary Structure
MEGLIALAVLLVIVLIVLVNCIKIVPQAHAMVIERLGGYLTTWSVGLHLKVPFIDRIAKK
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEEEEEEECHHHHHHHHH
VILKEQVVDFPPQPVITKDNVTMQIDTVVYFQITDPKLYAYGVENPIMAIENLTATTLRN
HHHHHHHHCCCCCCEEECCCEEEEEEEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHH
IIGDLELDETLTSRETINTKMRATLDVATDPWGIKVNRVELKNIIPPKAIQDAMEKQMKA
HHCCCCHHHHHHHHHHHCHHHEEEEEECCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHH
ERERREAILRAEGEKKSTILVAEGNKESVILDAEAEKQAAILRAEAKKEATIQEAAGQAE
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHH
AILKIQQANADGLRMLKEANPDNAVLQIKSLEAFAKAADGKATKIIIPSEIQGIAGLTKS
HHEEEECCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH
IAEIAADKTEK
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]