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The map label for this gene is yybT [H]

Identifier: 238925604

GI number: 238925604

Start: 3098145

End: 3100202

Strand: Reverse

Name: yybT [H]

Synonym: EUBREC_3260

Alternate gene names: 238925604

Gene position: 3100202-3098145 (Counterclockwise)

Preceding gene: 238925605

Following gene: 238925603

Centisome position: 89.87

GC content: 47.04

Gene sequence:

>2058_bases
ATGAAGAAAAAAATAAAATTCAAGGGCAGGCTGAAAAGCTACATGTGCTGGCCGCTATATCTGACGTTTGTGTGGATATG
TGCTGACGGAATAGCACTGCGCTATGACAGAAGGCTTGGCTATGGCATGGTAGGCTTTACAGTGTTTTACTTTGCGCTCG
TGCTGTTTTTGTATGTCAGAAGCAAGTCGGTCGTTGCAAATGAGCTGATAAGCTTTGCAACACAGTATTCATCGGTGCAG
AAGAGGCTGCTTAATGAGTTTGAGGTGCCGTATGCCCTGCTTGAATACTCCGGCAAGATACTATGGGTAAATGACAAATT
CGCAGAGCTAATGGGTGTGGATAAAAAATATCACAAATCCATCACGACACTTTTTCCGACAGTGACCAGAGAGCTTCTCA
CCAAGAGTGATGCGCCGACAGACTTCAAGATAGTAAATGAGGAGGAGGACAGCATAGTCCGTCTGTCCGTCAAGCGAATA
TATTTCAACTCTATCGCAGAGGAAAATGAGATAATCGACACAAATGAAGCAGACCAGTTTTTGACGGCGCTGTACGTATT
TGATGAGTCGGAGCTTTATCACTGCAAGAAGGAAATCACAGAGCAGAAGCAGGTCTCAGCGCTTGTATATATTGACAACT
ATGATGAGGCGCTCGACAGCATAGAGGACGTAAAGAGGTCGCTGCTCGTTGCACTTATCGACAGGCGTGTAAACCAGTAT
TTTGCCAAGTATGACGGACTTGTCAGAAAGATAGAAAACGACAAATACTTCGTGGTGTTCAAGTACAAGTACCTTGACAG
CATGAAGGAGGACAAGTTCAAGGTGCTCGACGAGGTCAAGGCTATAAAGGTCGGCAACGAGATGGCGGTCACACTCAGTA
TCGGAATCGGTATAAAGAGCGATAAGTATAATGAAAACTACGTATATGCGCGAAATGCCATAGACTTAGCCCTCGGACGA
GGCGGTGATCAGGTAGTTATAAAGGATCACGACGATATCCTGTATTTTGGCGGCAAGTCAAAGCAGGTGGAGAGCAAGAC
AAGGGTAAAGGCGAGAGTCAAGGCACAGGCGCTTCAGGAAATCATTGAGACCTGTGAGAACGTGCTTATCATGGGCCACA
GCATCACAGATGTAGACTCGCTTGGAGCAGGCATAGGTATATACTGTGCAGCCAAGAATCTCGACAAAAAGGCACAGATA
GTCATAAATGATCCGACAAGCTCAGTAAGACCTCTTATGGAGACATTTTCAGAGGCAAAGGGCTACCCGGCGGATATGTT
TATAAACAGCGAAGAAGCTCTTGAGATGGTGAGCAAGGATACGCTTGTCATGGTGGTGGACACCAACAGGCCAAGCTACA
CAGAGTGTCCTGAGCTCCTCAGAAAGACAGGAAAGATAGTCGTATTTGACCACCACAGACAAAGCAGCGAGATAATAGAG
AATCCTATACTCTCATATATCGAGCCGTATGCATCAAGTGCGTGTGAGATGGTTGCAGAGGTATTGCAGTACTTCAACGA
CGGAGTCAAGATCAATGCGACAGAGGCCGACTGCATCTACGCAGGCATCCTCATCGATACCAACAACTTTATGACAAAGA
CAGGCGTGCGTACATTTGAGGCGGCAGCCTTTTTGAAGCGCTCAGGCGCAGAGGTAACACGCGTCAGAAAGATGCTTAGA
AATGACATGGCATGCTACAAGGCAAGAGCCGAGGCAGTACGCCATGCAGAGGTATACAGGGGCTCGTTTGCCATATCGGT
ATGCCCTAGCGAGAATGTGGAGAGCCCGACAATCGTTGGTGCACAGGCAGCAAATGAGCTGCTCAATATCATAGGAATCA
AGGCATCATTTGTGCTCACGGAGTACAATGACAAGATTTATATCAGCTCTCGTTCAATCGACGAGATAAATGTCCAGATA
ATCATGGAGAAGCTGGGCGGTGGCGGACACTTAAATGTGGCAGGCGCGCAGCTGACAGGCGTCACTATCGTGCAGGCGAA
GCGCATGATACAGGATACACTGGACGAAATGCTAAAAGAAGGAGACATAGAAGAATGA

Upstream 100 bases:

>100_bases
AAGGTGTGATCGGTAACTTATAAATTTGTAGTACATTCTCGAAACCGCAACCGTTGCACTGGCAGCATCAGCGCAACGCA
CCGGGGATAAGGAGAGTAAA

Downstream 100 bases:

>100_bases
AAGTAATCTTATTACAGGACGTAAAACCATTAGGCAAAAAAGGCGAGATAGTAAACGTAAGTGACGGCTACGCCAGAAAC
AATATCATACCTAAAAAGCT

Product: DHH subfamily phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 685; Mature: 685

Protein sequence:

>685_residues
MKKKIKFKGRLKSYMCWPLYLTFVWICADGIALRYDRRLGYGMVGFTVFYFALVLFLYVRSKSVVANELISFATQYSSVQ
KRLLNEFEVPYALLEYSGKILWVNDKFAELMGVDKKYHKSITTLFPTVTRELLTKSDAPTDFKIVNEEEDSIVRLSVKRI
YFNSIAEENEIIDTNEADQFLTALYVFDESELYHCKKEITEQKQVSALVYIDNYDEALDSIEDVKRSLLVALIDRRVNQY
FAKYDGLVRKIENDKYFVVFKYKYLDSMKEDKFKVLDEVKAIKVGNEMAVTLSIGIGIKSDKYNENYVYARNAIDLALGR
GGDQVVIKDHDDILYFGGKSKQVESKTRVKARVKAQALQEIIETCENVLIMGHSITDVDSLGAGIGIYCAAKNLDKKAQI
VINDPTSSVRPLMETFSEAKGYPADMFINSEEALEMVSKDTLVMVVDTNRPSYTECPELLRKTGKIVVFDHHRQSSEIIE
NPILSYIEPYASSACEMVAEVLQYFNDGVKINATEADCIYAGILIDTNNFMTKTGVRTFEAAAFLKRSGAEVTRVRKMLR
NDMACYKARAEAVRHAEVYRGSFAISVCPSENVESPTIVGAQAANELLNIIGIKASFVLTEYNDKIYISSRSIDEINVQI
IMEKLGGGGHLNVAGAQLTGVTIVQAKRMIQDTLDEMLKEGDIEE

Sequences:

>Translated_685_residues
MKKKIKFKGRLKSYMCWPLYLTFVWICADGIALRYDRRLGYGMVGFTVFYFALVLFLYVRSKSVVANELISFATQYSSVQ
KRLLNEFEVPYALLEYSGKILWVNDKFAELMGVDKKYHKSITTLFPTVTRELLTKSDAPTDFKIVNEEEDSIVRLSVKRI
YFNSIAEENEIIDTNEADQFLTALYVFDESELYHCKKEITEQKQVSALVYIDNYDEALDSIEDVKRSLLVALIDRRVNQY
FAKYDGLVRKIENDKYFVVFKYKYLDSMKEDKFKVLDEVKAIKVGNEMAVTLSIGIGIKSDKYNENYVYARNAIDLALGR
GGDQVVIKDHDDILYFGGKSKQVESKTRVKARVKAQALQEIIETCENVLIMGHSITDVDSLGAGIGIYCAAKNLDKKAQI
VINDPTSSVRPLMETFSEAKGYPADMFINSEEALEMVSKDTLVMVVDTNRPSYTECPELLRKTGKIVVFDHHRQSSEIIE
NPILSYIEPYASSACEMVAEVLQYFNDGVKINATEADCIYAGILIDTNNFMTKTGVRTFEAAAFLKRSGAEVTRVRKMLR
NDMACYKARAEAVRHAEVYRGSFAISVCPSENVESPTIVGAQAANELLNIIGIKASFVLTEYNDKIYISSRSIDEINVQI
IMEKLGGGGHLNVAGAQLTGVTIVQAKRMIQDTLDEMLKEGDIEE
>Mature_685_residues
MKKKIKFKGRLKSYMCWPLYLTFVWICADGIALRYDRRLGYGMVGFTVFYFALVLFLYVRSKSVVANELISFATQYSSVQ
KRLLNEFEVPYALLEYSGKILWVNDKFAELMGVDKKYHKSITTLFPTVTRELLTKSDAPTDFKIVNEEEDSIVRLSVKRI
YFNSIAEENEIIDTNEADQFLTALYVFDESELYHCKKEITEQKQVSALVYIDNYDEALDSIEDVKRSLLVALIDRRVNQY
FAKYDGLVRKIENDKYFVVFKYKYLDSMKEDKFKVLDEVKAIKVGNEMAVTLSIGIGIKSDKYNENYVYARNAIDLALGR
GGDQVVIKDHDDILYFGGKSKQVESKTRVKARVKAQALQEIIETCENVLIMGHSITDVDSLGAGIGIYCAAKNLDKKAQI
VINDPTSSVRPLMETFSEAKGYPADMFINSEEALEMVSKDTLVMVVDTNRPSYTECPELLRKTGKIVVFDHHRQSSEIIE
NPILSYIEPYASSACEMVAEVLQYFNDGVKINATEADCIYAGILIDTNNFMTKTGVRTFEAAAFLKRSGAEVTRVRKMLR
NDMACYKARAEAVRHAEVYRGSFAISVCPSENVESPTIVGAQAANELLNIIGIKASFVLTEYNDKIYISSRSIDEINVQI
IMEKLGGGGHLNVAGAQLTGVTIVQAKRMIQDTLDEMLKEGDIEE

Specific function: Unknown

COG id: COG3887

COG function: function code T; Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000160
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR014528 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 77471; Mature: 77471

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIKFKGRLKSYMCWPLYLTFVWICADGIALRYDRRLGYGMVGFTVFYFALVLFLYVR
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
SKSVVANELISFATQYSSVQKRLLNEFEVPYALLEYSGKILWVNDKFAELMGVDKKYHKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECHHHHHHCCCHHHHHH
ITTLFPTVTRELLTKSDAPTDFKIVNEEEDSIVRLSVKRIYFNSIAEENEIIDTNEADQF
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHH
LTALYVFDESELYHCKKEITEQKQVSALVYIDNYDEALDSIEDVKRSLLVALIDRRVNQY
HEEHEEECCHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAKYDGLVRKIENDKYFVVFKYKYLDSMKEDKFKVLDEVKAIKVGNEMAVTLSIGIGIKS
HHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHEECCCCEEEEEEEEEEECC
DKYNENYVYARNAIDLALGRGGDQVVIKDHDDILYFGGKSKQVESKTRVKARVKAQALQE
CCCCCCEEEECCCEEEEECCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
IIETCENVLIMGHSITDVDSLGAGIGIYCAAKNLDKKAQIVINDPTSSVRPLMETFSEAK
HHHHHHHHEEECCCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHC
GYPADMFINSEEALEMVSKDTLVMVVDTNRPSYTECPELLRKTGKIVVFDHHRQSSEIIE
CCCHHEEECCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHH
NPILSYIEPYASSACEMVAEVLQYFNDGVKINATEADCIYAGILIDTNNFMTKTGVRTFE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCEECCCCHHHH
AAAFLKRSGAEVTRVRKMLRNDMACYKARAEAVRHAEVYRGSFAISVCPSENVESPTIVG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEC
AQAANELLNIIGIKASFVLTEYNDKIYISSRSIDEINVQIIMEKLGGGGHLNVAGAQLTG
HHHHHHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHHEEHEECCCCCCEEEEECCEECC
VTIVQAKRMIQDTLDEMLKEGDIEE
CHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKKIKFKGRLKSYMCWPLYLTFVWICADGIALRYDRRLGYGMVGFTVFYFALVLFLYVR
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
SKSVVANELISFATQYSSVQKRLLNEFEVPYALLEYSGKILWVNDKFAELMGVDKKYHKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECHHHHHHCCCHHHHHH
ITTLFPTVTRELLTKSDAPTDFKIVNEEEDSIVRLSVKRIYFNSIAEENEIIDTNEADQF
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHH
LTALYVFDESELYHCKKEITEQKQVSALVYIDNYDEALDSIEDVKRSLLVALIDRRVNQY
HEEHEEECCHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAKYDGLVRKIENDKYFVVFKYKYLDSMKEDKFKVLDEVKAIKVGNEMAVTLSIGIGIKS
HHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHEECCCCEEEEEEEEEEECC
DKYNENYVYARNAIDLALGRGGDQVVIKDHDDILYFGGKSKQVESKTRVKARVKAQALQE
CCCCCCEEEECCCEEEEECCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
IIETCENVLIMGHSITDVDSLGAGIGIYCAAKNLDKKAQIVINDPTSSVRPLMETFSEAK
HHHHHHHHEEECCCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHC
GYPADMFINSEEALEMVSKDTLVMVVDTNRPSYTECPELLRKTGKIVVFDHHRQSSEIIE
CCCHHEEECCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHH
NPILSYIEPYASSACEMVAEVLQYFNDGVKINATEADCIYAGILIDTNNFMTKTGVRTFE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCEECCCCHHHH
AAAFLKRSGAEVTRVRKMLRNDMACYKARAEAVRHAEVYRGSFAISVCPSENVESPTIVG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEC
AQAANELLNIIGIKASFVLTEYNDKIYISSRSIDEINVQIIMEKLGGGGHLNVAGAQLTG
HHHHHHHHHHHCCEEEEEEEECCCEEEEECCCCCHHHHEEHEECCCCCCEEEEECCEECC
VTIVQAKRMIQDTLDEMLKEGDIEE
CHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]