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The map label for this gene is cpsD [H]

Identifier: 238925469

GI number: 238925469

Start: 2980307

End: 2981020

Strand: Reverse

Name: cpsD [H]

Synonym: EUBREC_3124

Alternate gene names: 238925469

Gene position: 2981020-2980307 (Counterclockwise)

Preceding gene: 238925470

Following gene: 238925468

Centisome position: 86.41

GC content: 46.36

Gene sequence:

>714_bases
ATGGAATTAGTAAAATTTGGCAAGCTAAAAGAACAAAGCTATACGATGAAGGAATCACTTCGAGCTTTGAAGACAAATAT
ACAGTTTTGCGGGGATGATATACGCACGCTTCTTGTGACAAGCTCTGTACCAAATGAAGGCAAAAGCACCGTGGCACTTG
ATCTGGCGCGGTCACTTACAGAGTCAGGAAATAGAGTGCTTTTCATAGATACTGATATGCGTAAATCAGTACTTGCAGGG
CGTCTGCGTGCCACAGCGGCAAGTGGAGGGGAGATATGCGGATTGTCGCACTATCTTTCCGGTCAGAGACGTCTTGAGGA
AGTGATGTATGGCACGGAAATACCGGGCCTTTTTATGATATTTGCAGGGCCGTCTGTGCCGAATCCGACAGAGATTCTCG
AGAAAAAATACTTTCAGGAGCTTCTTAATTTCGGCAAGGAGCACTTTAACTACATAATTATAGACTGTGCACCGATAGGA
GCTGCCATAGATGCGGCAGTTGTAGCAAAGTATTGTGACGGAGCTATAATAGTGATAGGACAGGGCATGGCGAGCGCCAG
GATGATACAGAGTGTGAAAAAACAGCTCGAGGCATCGGGAGTGAGGATACTGGGCGCTGTGCTCAACAAGGTAAACAACA
AGAAAAACAGCCATGTCAGTGGGTACTATGGCAATTACTACGGCAGCTATTACGGGCGGTCGGATAAAGCATGA

Upstream 100 bases:

>100_bases
AGCATGGAAAGGGTAGAAAACATAGCAGAGGCAGCCACAGAAAGAAAAGAAAAAAGAAATCGGCTTCAGCATAAGGAAGC
CTGTATCAGGAGATGGGCAG

Downstream 100 bases:

>100_bases
AAAGCATCGATGTAGAGTTAGGAAAATCAAATATGCTTCCGCTTATTGCAAGCCAGCAGTTTTATGCTTCGTGGAAGGTC
TTTATCAGGGAGCTTTTGCT

Product: capsular exopolysaccharide family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MELVKFGKLKEQSYTMKESLRALKTNIQFCGDDIRTLLVTSSVPNEGKSTVALDLARSLTESGNRVLFIDTDMRKSVLAG
RLRATAASGGEICGLSHYLSGQRRLEEVMYGTEIPGLFMIFAGPSVPNPTEILEKKYFQELLNFGKEHFNYIIIDCAPIG
AAIDAAVVAKYCDGAIIVIGQGMASARMIQSVKKQLEASGVRILGAVLNKVNNKKNSHVSGYYGNYYGSYYGRSDKA

Sequences:

>Translated_237_residues
MELVKFGKLKEQSYTMKESLRALKTNIQFCGDDIRTLLVTSSVPNEGKSTVALDLARSLTESGNRVLFIDTDMRKSVLAG
RLRATAASGGEICGLSHYLSGQRRLEEVMYGTEIPGLFMIFAGPSVPNPTEILEKKYFQELLNFGKEHFNYIIIDCAPIG
AAIDAAVVAKYCDGAIIVIGQGMASARMIQSVKKQLEASGVRILGAVLNKVNNKKNSHVSGYYGNYYGSYYGRSDKA
>Mature_237_residues
MELVKFGKLKEQSYTMKESLRALKTNIQFCGDDIRTLLVTSSVPNEGKSTVALDLARSLTESGNRVLFIDTDMRKSVLAG
RLRATAASGGEICGLSHYLSGQRRLEEVMYGTEIPGLFMIFAGPSVPNPTEILEKKYFQELLNFGKEHFNYIIIDCAPIG
AAIDAAVVAKYCDGAIIVIGQGMASARMIQSVKKQLEASGVRILGAVLNKVNNKKNSHVSGYYGNYYGSYYGRSDKA

Specific function: Involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylation of CpsD attenuates its activity and reduces the level of encapsulation. May be part of a complex that directs the coordinated polymerization and export to the cell sur

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

Organism=Escherichia coli, GI1787216, Length=196, Percent_Identity=32.1428571428571, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082032, Length=215, Percent_Identity=28.8372093023256, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 25926; Mature: 25926

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVKFGKLKEQSYTMKESLRALKTNIQFCGDDIRTLLVTSSVPNEGKSTVALDLARSLT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCHHHHHHHHHHH
ESGNRVLFIDTDMRKSVLAGRLRATAASGGEICGLSHYLSGQRRLEEVMYGTEIPGLFMI
HCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEE
FAGPSVPNPTEILEKKYFQELLNFGKEHFNYIIIDCAPIGAAIDAAVVAKYCDGAIIVIG
EECCCCCCHHHHHHHHHHHHHHHHCHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
QGMASARMIQSVKKQLEASGVRILGAVLNKVNNKKNSHVSGYYGNYYGSYYGRSDKA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELVKFGKLKEQSYTMKESLRALKTNIQFCGDDIRTLLVTSSVPNEGKSTVALDLARSLT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHEEEECCCCCCCCCHHHHHHHHHHH
ESGNRVLFIDTDMRKSVLAGRLRATAASGGEICGLSHYLSGQRRLEEVMYGTEIPGLFMI
HCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEE
FAGPSVPNPTEILEKKYFQELLNFGKEHFNYIIIDCAPIGAAIDAAVVAKYCDGAIIVIG
EECCCCCCHHHHHHHHHHHHHHHHCHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
QGMASARMIQSVKKQLEASGVRILGAVLNKVNNKKNSHVSGYYGNYYGSYYGRSDKA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10464185; 11027683 [H]