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The map label for this gene is ttdB [H]

Identifier: 238925425

GI number: 238925425

Start: 2945368

End: 2945994

Strand: Reverse

Name: ttdB [H]

Synonym: EUBREC_3080

Alternate gene names: 238925425

Gene position: 2945994-2945368 (Counterclockwise)

Preceding gene: 238925426

Following gene: 238925424

Centisome position: 85.4

GC content: 44.82

Gene sequence:

>627_bases
ATGGTAGAGAGAATTAATGGAAAAACAATTTTAACAACACCAATCTCAGCAGAGGATCTTAAAGGAATAAAAATCGGAGA
TATTGTATACTTAAATGGAAGCATGACAACATGCCGTGACGTAGCACACCGACGTCTCGTTGAGGAGGGAAGAGAGCTTC
CGGTAGACGTAAGAAACAATGCTATTTTCCATGCAGGACCGATCATCCGTCCACTCGAGAATGACAAATTTGAGATGGTA
TCTGTTGGACCGACAACAAGTATGCGTATGGAGAAATTCGAGTACGAGTTCGTAAAAGAGACCGGCGTACGTGTTATCAT
CGGAAAAGGTGGTATGAAAGAGAATACAGAGCGTGCATGTAAAGAGTTCGGTGCCATTCACTGCGTATTCCCGGCAGGAA
ATGCAGTAGTAGCCGCAACAGAGGTTGAGGAAATCGTCCGTGCAGAGTGGAGAGATCTCGGAATGCCTGAGACACTCTGG
AACTGCCGTGTGAAAGAGTTTGGCCCACTTATCGTATCTATAGATGCAGAGGGTAACAACTGGTTCGAGCAGCAGAAAGT
TGAGTTCAACAAGAAAAAGGATGCAGCAACAGAGGAAATCTGCAAGCAGGTAGGATTCATCAAATAG

Upstream 100 bases:

>100_bases
TAGCCGTAAACGTAGGCTGCTGGAGCCACAGACGCGGACACATTGTTTTTGATAAGGACCTTAACTATACAATCACAACA
CATTCGGGGGTGGAATTATA

Downstream 100 bases:

>100_bases
TTGCCGGAGCCTGGTATCAAATTTATTTAGAACCCAATTGCCATGAAAGTATTCTGGCAAAATATATACCCGCAGAATGC
GGGAGAAAACATAAAAAAAT

Product: L(+)-tartrate dehydratase subunit beta

Products: NA

Alternate protein names: L-TTD beta [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MVERINGKTILTTPISAEDLKGIKIGDIVYLNGSMTTCRDVAHRRLVEEGRELPVDVRNNAIFHAGPIIRPLENDKFEMV
SVGPTTSMRMEKFEYEFVKETGVRVIIGKGGMKENTERACKEFGAIHCVFPAGNAVVAATEVEEIVRAEWRDLGMPETLW
NCRVKEFGPLIVSIDAEGNNWFEQQKVEFNKKKDAATEEICKQVGFIK

Sequences:

>Translated_208_residues
MVERINGKTILTTPISAEDLKGIKIGDIVYLNGSMTTCRDVAHRRLVEEGRELPVDVRNNAIFHAGPIIRPLENDKFEMV
SVGPTTSMRMEKFEYEFVKETGVRVIIGKGGMKENTERACKEFGAIHCVFPAGNAVVAATEVEEIVRAEWRDLGMPETLW
NCRVKEFGPLIVSIDAEGNNWFEQQKVEFNKKKDAATEEICKQVGFIK
>Mature_208_residues
MVERINGKTILTTPISAEDLKGIKIGDIVYLNGSMTTCRDVAHRRLVEEGRELPVDVRNNAIFHAGPIIRPLENDKFEMV
SVGPTTSMRMEKFEYEFVKETGVRVIIGKGGMKENTERACKEFGAIHCVFPAGNAVVAATEVEEIVRAEWRDLGMPETLW
NCRVKEFGPLIVSIDAEGNNWFEQQKVEFNKKKDAATEEICKQVGFIK

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=201, Percent_Identity=60.1990049751244, Blast_Score=260, Evalue=5e-71,
Organism=Escherichia coli, GI1787897, Length=158, Percent_Identity=30.379746835443, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790564, Length=158, Percent_Identity=29.1139240506329, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 23405; Mature: 23405

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERINGKTILTTPISAEDLKGIKIGDIVYLNGSMTTCRDVAHRRLVEEGRELPVDVRNN
CCEECCCCEEEECCCCHHHCCCEEECEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
AIFHAGPIIRPLENDKFEMVSVGPTTSMRMEKFEYEFVKETGVRVIIGKGGMKENTERAC
EEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
KEFGAIHCVFPAGNAVVAATEVEEIVRAEWRDLGMPETLWNCRVKEFGPLIVSIDAEGNN
HHHCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCCEEEEEECCCCC
WFEQQKVEFNKKKDAATEEICKQVGFIK
CHHHHHHHCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MVERINGKTILTTPISAEDLKGIKIGDIVYLNGSMTTCRDVAHRRLVEEGRELPVDVRNN
CCEECCCCEEEECCCCHHHCCCEEECEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
AIFHAGPIIRPLENDKFEMVSVGPTTSMRMEKFEYEFVKETGVRVIIGKGGMKENTERAC
EEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
KEFGAIHCVFPAGNAVVAATEVEEIVRAEWRDLGMPETLWNCRVKEFGPLIVSIDAEGNN
HHHCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCCEEEEEECCCCC
WFEQQKVEFNKKKDAATEEICKQVGFIK
CHHHHHHHCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]