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The map label for this gene is ybaF [H]

Identifier: 238925344

GI number: 238925344

Start: 2877759

End: 2878592

Strand: Reverse

Name: ybaF [H]

Synonym: EUBREC_2999

Alternate gene names: 238925344

Gene position: 2878592-2877759 (Counterclockwise)

Preceding gene: 238925345

Following gene: 238925343

Centisome position: 83.45

GC content: 43.65

Gene sequence:

>834_bases
ATGATTCGTGATATTACCATAGGCCAGTATTATCCGGCTCAGTCGCCAATACATAAACTGGACCCAAGAGTAAAGCTTTT
CGCAACACTTATATATATTATTGCGCTGTTTTCCTACAAGGGAATAGCCGGTGTGCTGTTTATAGTTGCCGCGCTTGCCG
CAGTTATAAAGATTTCGAAGGTGCCCTTTAAGTTCATGGTAAAGGGACTCAAATCCATTATAATACTGCTGCTTTTTACA
GCATGCTTCAGCGTGTTTTTCACACAGGGAGAGTACACAATCTGGGAGTACGGTATACTGCACATTTCTGACACCGGACT
GATAAATGCAGCAACCATGATGATACGACTTGTGCTGCTCATTATAGGAACCTCGCTCATGACACTCACCACCACACCAA
ACCAGCTCACGGACGGTCTTGAGAAATCACTGGGCTTTTTAAACAAAATACATGTTCCGGTGCATGCGATAGCCATGATG
ATGTCGATAGCGCTTCGTTTTATTCCAATCCTTATTGAGGAGACGGACAAAATAATGAAAGCACAGATGGCAAGAGGAGC
TGATTTTGAGCATGGAAATATCATAAAAAGAGCAAAGAGCATGGTGCCTCTTTTAGTGCCTCTTTTCGTATCGGCATTCA
GGCGTGCGGATGACCTCGCAATGGCCATGGAGGCCAGATGCTACAATGGTGGAGAGGGCAGGACAAAGATGAAGCCGCTC
GTATATGAAAAGGACGATAAAATAGCATATCTTTTCATATTTGCTTTTTTAGCGGTTGTGATAGTGCTTAGAATCCTTCT
GCCGGTGAATCTGGGCAATCTTATTTTCAGATAG

Upstream 100 bases:

>100_bases
GCAACGACAGTTGCGGAGGCGAGGGACTCAATACTAAAAGCCTTTAAATAGCTCACCAATGCTGACATTTTGATACAAAT
TATGAGGAAGGAATACAAAA

Downstream 100 bases:

>100_bases
TGAAATAGATAGTGCAGGCAAAACAGGAGAGATATATGCGTGTAAAAATGATTGTAGCCTACGATGGCACAAATTACTGC
GGCTGGCAGATACAGCCAAA

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MIRDITIGQYYPAQSPIHKLDPRVKLFATLIYIIALFSYKGIAGVLFIVAALAAVIKISKVPFKFMVKGLKSIIILLLFT
ACFSVFFTQGEYTIWEYGILHISDTGLINAATMMIRLVLLIIGTSLMTLTTTPNQLTDGLEKSLGFLNKIHVPVHAIAMM
MSIALRFIPILIEETDKIMKAQMARGADFEHGNIIKRAKSMVPLLVPLFVSAFRRADDLAMAMEARCYNGGEGRTKMKPL
VYEKDDKIAYLFIFAFLAVVIVLRILLPVNLGNLIFR

Sequences:

>Translated_277_residues
MIRDITIGQYYPAQSPIHKLDPRVKLFATLIYIIALFSYKGIAGVLFIVAALAAVIKISKVPFKFMVKGLKSIIILLLFT
ACFSVFFTQGEYTIWEYGILHISDTGLINAATMMIRLVLLIIGTSLMTLTTTPNQLTDGLEKSLGFLNKIHVPVHAIAMM
MSIALRFIPILIEETDKIMKAQMARGADFEHGNIIKRAKSMVPLLVPLFVSAFRRADDLAMAMEARCYNGGEGRTKMKPL
VYEKDDKIAYLFIFAFLAVVIVLRILLPVNLGNLIFR
>Mature_277_residues
MIRDITIGQYYPAQSPIHKLDPRVKLFATLIYIIALFSYKGIAGVLFIVAALAAVIKISKVPFKFMVKGLKSIIILLLFT
ACFSVFFTQGEYTIWEYGILHISDTGLINAATMMIRLVLLIIGTSLMTLTTTPNQLTDGLEKSLGFLNKIHVPVHAIAMM
MSIALRFIPILIEETDKIMKAQMARGADFEHGNIIKRAKSMVPLLVPLFVSAFRRADDLAMAMEARCYNGGEGRTKMKPL
VYEKDDKIAYLFIFAFLAVVIVLRILLPVNLGNLIFR

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30994; Mature: 30994

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDITIGQYYPAQSPIHKLDPRVKLFATLIYIIALFSYKGIAGVLFIVAALAAVIKISK
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
VPFKFMVKGLKSIIILLLFTACFSVFFTQGEYTIWEYGILHISDTGLINAATMMIRLVLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
IIGTSLMTLTTTPNQLTDGLEKSLGFLNKIHVPVHAIAMMMSIALRFIPILIEETDKIMK
HHCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGADFEHGNIIKRAKSMVPLLVPLFVSAFRRADDLAMAMEARCYNGGEGRTKMKPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VYEKDDKIAYLFIFAFLAVVIVLRILLPVNLGNLIFR
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MIRDITIGQYYPAQSPIHKLDPRVKLFATLIYIIALFSYKGIAGVLFIVAALAAVIKISK
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
VPFKFMVKGLKSIIILLLFTACFSVFFTQGEYTIWEYGILHISDTGLINAATMMIRLVLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
IIGTSLMTLTTTPNQLTDGLEKSLGFLNKIHVPVHAIAMMMSIALRFIPILIEETDKIMK
HHCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQMARGADFEHGNIIKRAKSMVPLLVPLFVSAFRRADDLAMAMEARCYNGGEGRTKMKPL
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VYEKDDKIAYLFIFAFLAVVIVLRILLPVNLGNLIFR
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]