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The map label for this gene is hofQ [H]

Identifier: 238921473

GI number: 238921473

Start: 3511635

End: 3512864

Strand: Reverse

Name: hofQ [H]

Synonym: NT01EI_3625

Alternate gene names: 238921473

Gene position: 3512864-3511635 (Counterclockwise)

Preceding gene: 238921474

Following gene: 238921472

Centisome position: 92.15

GC content: 63.09

Gene sequence:

>1230_bases
GTGCTGCTGGTCATGAGTCCGACGGGGCAGGCGATGCCCCTGACGCTCTGGTTCGATCGCGCTCCCCTGTCCAGCGTGCT
GCAGGCGGTGGCGGAGTTTGCCGGGCTGAATCTGATCCTCAGTGAGGAGGTGCGTGGAGAGGCGACGGTACATATTGCCC
ACACTCCGTGGCCACGGGTACTTGATGCTCTGGCGGAGATCCACGATCTCAGCGTGGTACGGCGCGATGGGATACTGCTG
ATCCAAAGCCGTGCGCGTGCGGCGCGACAGATCAGGCCCGCTGCGGCGCCTGCGCCGCCCAAACCGCCGCAGATGCGGAG
CCAGCGCGTGGTGCTGCACTATGCTGATGCGGCCACGGTGGAGAAAAGCCTGCGTCAGCGTCGCGATTTGCTGGGTGAGA
CGGGCAGCGCGGTGGCTGACAGTCGAACTAATGCCCTGCTGCTGAGGGCGGAGGTCGCCCGTCTGGCGCCGCTGCGCGAC
TGGATTGCTCAGTTGGATGTACCACTGCCGCAGGTACAGCTGGCGGCCCATATTGTCTCTATCAGCCAAGAAGGGCTGCG
TGAACTGGGGATCCGCTGGAGCAGCGGTGACCAACGATCACGAGGGCAGGATACGTTACGCGGTGCGGCGGATGCCTATT
TCAGCGCGGGGTTTCAGGTAGCCCGCATCGGTGGCCAGACGCTGGCAGTCGCGCTTGCGGCATTGGAGCGGCAGGATAAG
GTGGCGATCATCGCCAGTCCGCATCTGATGGCTGCCCATGGGCAGACTGCCAGCATAAAACAGGGCAGTGAGCTCCCCTA
TGCCGTCTCCGGCGGCGAGCGTGGTGTGAGTACCATGGAGTTCAAGGAGGCGGTGCTGGGTATGTCGGTCACACCACGGA
TATTGGCCGATGCGCGTATCGAGCTGGCGCTGCAGATAAGCCAGAACATGCCGGGGCGCGTAGTGCGTCAGGGTGACAGC
GAGGCACTGGCTATCGATAAACAGGAAATTACGACCCAGGTTACTCTGGCCGACGGCGACACGGCGATGCTGGGCGGTAT
TTTTCAGTATCAGCGTCAGGTGGATAGCATCGGTTTTCCCTGGCTTGCCGATGTACCGCTGCTGGGCCATTTACTGCGCA
GCGACAGCCAGCGCAGCGGGCGGCGCGAACTGGTGATTTTTATTACGCCGACCCTGCTTTCTGCCTCTTCTCTTCTCCCT
CGAACGCTGCGCCCGCCGGCGCGTGGCTAA

Upstream 100 bases:

>100_bases
CGCTATATCCCTTTCGCTGTCCGCGCCTTATCCCTTTGGCGGCGCGTCGGGAGGGCGAGGGGACATGAGATGTCTTCCTG
CGTATGTCGCAGCTCTCGCG

Downstream 100 bases:

>100_bases
AAATTTTTATCACATGAATTGCTTCCGCGTTTGACGCTGGGATGGATTTGGCATACAAGGTTAGCGGTTTGCGCCTTGTT
CCGTCCCGTATTTCCTGTCG

Product: protein transport protein HofQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRVLDALAEIHDLSVVRRDGILL
IQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATVEKSLRQRRDLLGETGSAVADSRTNALLLRAEVARLAPLRD
WIAQLDVPLPQVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAGFQVARIGGQTLAVALAALERQDK
VAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDS
EALAIDKQEITTQVTLADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLP
RTLRPPARG

Sequences:

>Translated_409_residues
MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRVLDALAEIHDLSVVRRDGILL
IQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATVEKSLRQRRDLLGETGSAVADSRTNALLLRAEVARLAPLRD
WIAQLDVPLPQVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAGFQVARIGGQTLAVALAALERQDK
VAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDS
EALAIDKQEITTQVTLADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLP
RTLRPPARG
>Mature_409_residues
MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRVLDALAEIHDLSVVRRDGILL
IQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATVEKSLRQRRDLLGETGSAVADSRTNALLLRAEVARLAPLRD
WIAQLDVPLPQVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAGFQVARIGGQTLAVALAALERQDK
VAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDS
EALAIDKQEITTQVTLADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLP
RTLRPPARG

Specific function: Required for the use of extracellular DNA as a nutrient. Could be the porin responsible for transport of DNA across the outer membrane [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=409, Percent_Identity=44.2542787286064, Blast_Score=311, Evalue=4e-86,
Organism=Escherichia coli, GI87082242, Length=286, Percent_Identity=26.5734265734266, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR013355
- InterPro:   IPR011662
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]

EC number: NA

Molecular weight: Translated: 44240; Mature: 44240

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRV
CEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCHHHH
LDALAEIHDLSVVRRDGILLIQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATV
HHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCHHHH
EKSLRQRRDLLGETGSAVADSRTNALLLRAEVARLAPLRDWIAQLDVPLPQVQLAAHIVS
HHHHHHHHHHHCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAGFQVARIGGQTLAVALAALERQDK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCC
VAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRILADARI
EEEEECCCEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHCCEE
ELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLADGDTAMLGGIFQYQRQVDSIGFP
EEEEEECCCCCCCEEECCCCCEEEEEHHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCCC
WLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLPRTLRPPARG
CHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRV
CEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCHHHH
LDALAEIHDLSVVRRDGILLIQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATV
HHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCHHHH
EKSLRQRRDLLGETGSAVADSRTNALLLRAEVARLAPLRDWIAQLDVPLPQVQLAAHIVS
HHHHHHHHHHHCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAGFQVARIGGQTLAVALAALERQDK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCC
VAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEFKEAVLGMSVTPRILADARI
EEEEECCCEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCHHHHHCCEE
ELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLADGDTAMLGGIFQYQRQVDSIGFP
EEEEEECCCCCCCEEECCCCCEEEEEHHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCCC
WLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSASSLLPRTLRPPARG
CHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1309529; 9278503; 7901733 [H]