Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is metA
Identifier: 238921399
GI number: 238921399
Start: 3445595
End: 3446524
Strand: Reverse
Name: metA
Synonym: NT01EI_3543
Alternate gene names: 238921399
Gene position: 3446524-3445595 (Counterclockwise)
Preceding gene: 238921400
Following gene: 238921398
Centisome position: 90.41
GC content: 53.66
Gene sequence:
>930_bases ATGCCAATCAGGATCCCTGACGCGTTGCCCGCCGTTAATTTTTTACGTAATGAAAATGTCTTTGTCATGACCGATTCCCG GGCAGCGGTGCAGGAGATCCGTCCGCTGAAGGTGCTGTTGCTGAATCTGATGCCAAAGAAAATCGAGACTGAAAATCAGT TTCTGCGTCTGTTGTCGAACTCGCCACTGCAGATCGATATTCAGCTGTTGCGCATCGATCGGCGTGAGTCAAAAAATACG CCGATGGAGCATCTGAATAACTTTTACTGTCATTTTGAGGATATTCAGCAAGAAAATTTTGATGGTCTTGTCGTGACCGG CGCGCCGCTGGGACAAGTAGATTTTGGCGATGTTGCCTACTGGTCGCAGATCGTGCAGGTTATTGAGTGGGCGCGGGCGC ACGTGACATCGACCCTGTTCGTCTGCTGGGCCGCGCAGGCGGCGCTTAATATTCTGTATGGACTGCCGAAGATGACGCGG GCGCAGAAGCTATCCGGGGTTTATGAGCATCAGACGCTCAATCCGCTGGCGCTGTTGACCCGTGGCTTTGACGAAGGCTT TTTGGCGCCGCATTCGCGCTATGCCGACTTTCCGCCGCAGGCGATCCGTGAGCATACTGATCTGCAGATCTTTGCCGAGT CTGCGCAGGCCGGCGCCTACCTGTTTGCCAGCGTCGATAAGCGAACGGTGTTTGTTACGGGCCATCCGGAATATGATGCC CATACGCTGGGTGCTGAATATTGGCGCGATCTGCACGCTGGCCTGACACCGGCACTGCCGTTTAACTATTTTCCCCAGGA TAATTCGGACGGTACGCCGTTGGCGACCTGGCGCAGCCACGGTCACCTGTTGTTCAGTAACTGGCTAAACTACTGTGTTT ACCAGATAACTCCTTACGATCTGCGTCAGATGAATCCCACCTTGGAGTAA
Upstream 100 bases:
>100_bases TCAACGCTCTGTGCTGTACAAACGGCGTAAAACCGATTAATTTGGCTATCCAGATGTCTAAATGGACAAGGTTTGCCTTT GATCGTCCAGGAGAGCGTTT
Downstream 100 bases:
>100_bases GATCTACGCGCCATTTCCCCGGGCTAGCAGTAGACGGGGGGAATGACAAATAACCCTCACATTTCTCTGCCGTAATGCGT ATAATCGCCGCCCTGATCCT
Product: homoserine O-succinyltransferase
Products: NA
Alternate protein names: Homoserine O-transsuccinylase; HTS
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MPIRIPDALPAVNFLRNENVFVMTDSRAAVQEIRPLKVLLLNLMPKKIETENQFLRLLSNSPLQIDIQLLRIDRRESKNT PMEHLNNFYCHFEDIQQENFDGLVVTGAPLGQVDFGDVAYWSQIVQVIEWARAHVTSTLFVCWAAQAALNILYGLPKMTR AQKLSGVYEHQTLNPLALLTRGFDEGFLAPHSRYADFPPQAIREHTDLQIFAESAQAGAYLFASVDKRTVFVTGHPEYDA HTLGAEYWRDLHAGLTPALPFNYFPQDNSDGTPLATWRSHGHLLFSNWLNYCVYQITPYDLRQMNPTLE
Sequences:
>Translated_309_residues MPIRIPDALPAVNFLRNENVFVMTDSRAAVQEIRPLKVLLLNLMPKKIETENQFLRLLSNSPLQIDIQLLRIDRRESKNT PMEHLNNFYCHFEDIQQENFDGLVVTGAPLGQVDFGDVAYWSQIVQVIEWARAHVTSTLFVCWAAQAALNILYGLPKMTR AQKLSGVYEHQTLNPLALLTRGFDEGFLAPHSRYADFPPQAIREHTDLQIFAESAQAGAYLFASVDKRTVFVTGHPEYDA HTLGAEYWRDLHAGLTPALPFNYFPQDNSDGTPLATWRSHGHLLFSNWLNYCVYQITPYDLRQMNPTLE >Mature_308_residues PIRIPDALPAVNFLRNENVFVMTDSRAAVQEIRPLKVLLLNLMPKKIETENQFLRLLSNSPLQIDIQLLRIDRRESKNTP MEHLNNFYCHFEDIQQENFDGLVVTGAPLGQVDFGDVAYWSQIVQVIEWARAHVTSTLFVCWAAQAALNILYGLPKMTRA QKLSGVYEHQTLNPLALLTRGFDEGFLAPHSRYADFPPQAIREHTDLQIFAESAQAGAYLFASVDKRTVFVTGHPEYDAH TLGAEYWRDLHAGLTPALPFNYFPQDNSDGTPLATWRSHGHLLFSNWLNYCVYQITPYDLRQMNPTLE
Specific function: Methionine biosynthesis; HTS variant; first step. [C]
COG id: COG1897
COG function: function code E; Homoserine trans-succinylase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HTS family
Homologues:
Organism=Escherichia coli, GI1790443, Length=309, Percent_Identity=76.0517799352751, Blast_Score=503, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): META_EDWI9 (C5BF07)
Other databases:
- EMBL: CP001600 - RefSeq: YP_002934914.1 - ProteinModelPortal: C5BF07 - SMR: C5BF07 - GeneID: 7962541 - GenomeReviews: CP001600_GR - KEGG: eic:NT01EI_3543 - OMA: QAGLYYH - ProtClustDB: PRK05368 - GO: GO:0005737 - HAMAP: MF_00295 - InterPro: IPR005697 - PANTHER: PTHR20919 - PIRSF: PIRSF000450 - ProDom: PD037892 - TIGRFAMs: TIGR01001
Pfam domain/function: PF04204 HTS
EC number: =2.3.1.46
Molecular weight: Translated: 35303; Mature: 35171
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: ACT_SITE 142-142
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIRIPDALPAVNFLRNENVFVMTDSRAAVQEIRPLKVLLLNLMPKKIETENQFLRLLSN CCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCC SPLQIDIQLLRIDRRESKNTPMEHLNNFYCHFEDIQQENFDGLVVTGAPLGQVDFGDVAY CCCEEEEEEEEEECCCCCCCCHHHHHCCEEEHHHHHCCCCCEEEEECCCCCCCCCCHHHH WSQIVQVIEWARAHVTSTLFVCWAAQAALNILYGLPKMTRAQKLSGVYEHQTLNPLALLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH RGFDEGFLAPHSRYADFPPQAIREHTDLQIFAESAQAGAYLFASVDKRTVFVTGHPEYDA CCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCCCC HTLGAEYWRDLHAGLTPALPFNYFPQDNSDGTPLATWRSHGHLLFSNWLNYCVYQITPYD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHEEEECCCHH LRQMNPTLE HHHCCCCCC >Mature Secondary Structure PIRIPDALPAVNFLRNENVFVMTDSRAAVQEIRPLKVLLLNLMPKKIETENQFLRLLSN CCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHCC SPLQIDIQLLRIDRRESKNTPMEHLNNFYCHFEDIQQENFDGLVVTGAPLGQVDFGDVAY CCCEEEEEEEEEECCCCCCCCHHHHHCCEEEHHHHHCCCCCEEEEECCCCCCCCCCHHHH WSQIVQVIEWARAHVTSTLFVCWAAQAALNILYGLPKMTRAQKLSGVYEHQTLNPLALLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH RGFDEGFLAPHSRYADFPPQAIREHTDLQIFAESAQAGAYLFASVDKRTVFVTGHPEYDA CCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCCCC HTLGAEYWRDLHAGLTPALPFNYFPQDNSDGTPLATWRSHGHLLFSNWLNYCVYQITPYD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHEEEECCCHH LRQMNPTLE HHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA