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The map label for this gene is yjbQ [H]

Identifier: 238921395

GI number: 238921395

Start: 3440376

End: 3440708

Strand: Reverse

Name: yjbQ [H]

Synonym: NT01EI_3539

Alternate gene names: 238921395

Gene position: 3440708-3440376 (Counterclockwise)

Preceding gene: 238921396

Following gene: 238921394

Centisome position: 90.25

GC content: 55.86

Gene sequence:

>333_bases
ATGTGGTATCAGTATACCTTGGTTCTACGGGCGAGACCGCGTGGTTTCTACCTGATTACTGCTGAAATGATTGTTGGCCT
GCCCGTGTGGTGTCAGGTGCCGGTAGAACTGTTGCACCTGCTGTTACAGCACACCTCTGCGTCGCTTACCCTCAATGAAA
GCTGTGATCCATCAGTGCGCTATGACATGGACGGTTACTTTTCGCGTACGGCAGCGGACGCTACTCCCTATGCGCACGGC
GATGAAGGTGCGGATGAGATGCCTGCACATATAGTGTCGTCCCTACTGGGCGTCTCGCTGACGGTGTGTCAGGGGGCGGG
CGTTGCAGCTTGA

Upstream 100 bases:

>100_bases
CGCGTTACTGACGCGGCGTCTGACTATCTTTACAGAACTTTCCGCTGCGTTTTCTTGCCGCTGACTGTACAAAGAATATA
CTTGTCGGGAGCACCGCAAG

Downstream 100 bases:

>100_bases
AACCTGGCAGGGTATTTGGCTTGGTGAACACCGCCTACAGGGCAGTGCGCGCCGTATTGTAGCAACCATACAAGGGGATA
GGATTGATGAATGATTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MWYQYTLVLRARPRGFYLITAEMIVGLPVWCQVPVELLHLLLQHTSASLTLNESCDPSVRYDMDGYFSRTAADATPYAHG
DEGADEMPAHIVSSLLGVSLTVCQGAGVAA

Sequences:

>Translated_110_residues
MWYQYTLVLRARPRGFYLITAEMIVGLPVWCQVPVELLHLLLQHTSASLTLNESCDPSVRYDMDGYFSRTAADATPYAHG
DEGADEMPAHIVSSLLGVSLTVCQGAGVAA
>Mature_110_residues
MWYQYTLVLRARPRGFYLITAEMIVGLPVWCQVPVELLHLLLQHTSASLTLNESCDPSVRYDMDGYFSRTAADATPYAHG
DEGADEMPAHIVSSLLGVSLTVCQGAGVAA

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=102, Percent_Identity=58.8235294117647, Blast_Score=125, Evalue=7e-31,
Organism=Drosophila melanogaster, GI221476594, Length=101, Percent_Identity=43.5643564356436, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI221476589, Length=101, Percent_Identity=43.5643564356436, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 12002; Mature: 12002

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYQYTLVLRARPRGFYLITAEMIVGLPVWCQVPVELLHLLLQHTSASLTLNESCDPSVR
CCEEEEEEEEECCCCEEEEEEHHHHCCCCCEECHHHHHHHHHHCCCCEEEECCCCCCCEE
YDMDGYFSRTAADATPYAHGDEGADEMPAHIVSSLLGVSLTVCQGAGVAA
ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure
MWYQYTLVLRARPRGFYLITAEMIVGLPVWCQVPVELLHLLLQHTSASLTLNESCDPSVR
CCEEEEEEEEECCCCEEEEEEHHHHCCCCCEECHHHHHHHHHHCCCCEEEECCCCCCCEE
YDMDGYFSRTAADATPYAHGDEGADEMPAHIVSSLLGVSLTVCQGAGVAA
ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]