Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921299
Identifier: 238921299
GI number: 238921299
Start: 3332847
End: 3333503
Strand: Reverse
Name: 238921299
Synonym: NT01EI_3442
Alternate gene names: NA
Gene position: 3333503-3332847 (Counterclockwise)
Preceding gene: 238921300
Following gene: 238921298
Centisome position: 87.44
GC content: 56.16
Gene sequence:
>657_bases ATGGCTTATGATTACAGCGCCAACCTCAACCCGGAAAAAGCCCTGATCTGGCGCATTGTCCATCGGGATAATATCCCGTG GATACTGGACCACGGTCTGCACTGCGGCAACAGCCCGGTGCAGGCGGCAAACTGGATCAATATCGGCAACCCGGAACTTA TCGGCAAACGCGCCGGGCATCCGGTGCCTGTCGGTATGGGCGGGACGCTGCATGACTACGTGCCGTTTTACTTTACCCCC TTTTCGCCGATGCTGATGAATATCCACAGCGGGCGTGGCGGCATTACGCAGCGCCCCAATGAGGAAATCGTCATTCTGGT CAGCAACCTGCGAAACGTGGCGGCGCAGAACATCCCCTTCGTGTTTACCGACAGCCACGCCTACTATAACTGGGTCAACT ACTACACCCGTCTGGACGATCTGAACCAGATCGACTGGTCTATCTTACAGGCGCGGGATTTCCGTCGCGATCCGGACGAT CCGGCGAAGTTTGAACGCTATCAGGCCGAGGCGTTAATCTGGAAGCACTGCCCCATCACACTGCTGGTCGGGATGATTTG TTACAACGATGGCGTCAGGTTACAATTAGAGCAGTGGCTGTCGCAACGTAATCTGACAATGCCCGTTCACGCACGGGCCG GGTGGTACTTCTCATGA
Upstream 100 bases:
>100_bases GACCTTGCACCAGCGTCTGGACAAAACCCGCCAGCTTAAACAGGGGATGATGCAGGAGCTGTTAACCGGGAAAACCCGCT TAATATAGAAGGGAACGCAC
Downstream 100 bases:
>100_bases TCACATATACACAAGGCAATTTACTGGACGCGCCCGTGGAAGCACTGGTGAATACGGTGAATACCGTCGGTGTCATGGGT AAAGGCATCGCGCTGATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MAYDYSANLNPEKALIWRIVHRDNIPWILDHGLHCGNSPVQAANWINIGNPELIGKRAGHPVPVGMGGTLHDYVPFYFTP FSPMLMNIHSGRGGITQRPNEEIVILVSNLRNVAAQNIPFVFTDSHAYYNWVNYYTRLDDLNQIDWSILQARDFRRDPDD PAKFERYQAEALIWKHCPITLLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS
Sequences:
>Translated_218_residues MAYDYSANLNPEKALIWRIVHRDNIPWILDHGLHCGNSPVQAANWINIGNPELIGKRAGHPVPVGMGGTLHDYVPFYFTP FSPMLMNIHSGRGGITQRPNEEIVILVSNLRNVAAQNIPFVFTDSHAYYNWVNYYTRLDDLNQIDWSILQARDFRRDPDD PAKFERYQAEALIWKHCPITLLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS >Mature_217_residues AYDYSANLNPEKALIWRIVHRDNIPWILDHGLHCGNSPVQAANWINIGNPELIGKRAGHPVPVGMGGTLHDYVPFYFTPF SPMLMNIHSGRGGITQRPNEEIVILVSNLRNVAAQNIPFVFTDSHAYYNWVNYYTRLDDLNQIDWSILQARDFRRDPDDP AKFERYQAEALIWKHCPITLLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25179; Mature: 25048
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYDYSANLNPEKALIWRIVHRDNIPWILDHGLHCGNSPVQAANWINIGNPELIGKRAGH CCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEECCCHHEECCCCCC PVPVGMGGTLHDYVPFYFTPFSPMLMNIHSGRGGITQRPNEEIVILVSNLRNVAAQNIPF CCEECCCCCHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCE VFTDSHAYYNWVNYYTRLDDLNQIDWSILQARDFRRDPDDPAKFERYQAEALIWKHCPIT EEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCHH LLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS HHHHHHHCCCCCEEEHHHHHHHCCCCEEEECCCCCCCC >Mature Secondary Structure AYDYSANLNPEKALIWRIVHRDNIPWILDHGLHCGNSPVQAANWINIGNPELIGKRAGH CCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEECCCHHEECCCCCC PVPVGMGGTLHDYVPFYFTPFSPMLMNIHSGRGGITQRPNEEIVILVSNLRNVAAQNIPF CCEECCCCCHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCE VFTDSHAYYNWVNYYTRLDDLNQIDWSILQARDFRRDPDDPAKFERYQAEALIWKHCPIT EEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCHH LLVGMICYNDGVRLQLEQWLSQRNLTMPVHARAGWYFS HHHHHHHCCCCCEEEHHHHHHHCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA