Click here to switch to the map view.

The map label for this gene is dcuD [C]

Identifier: 238921249

GI number: 238921249

Start: 3278007

End: 3279263

Strand: Direct

Name: dcuD [C]

Synonym: NT01EI_3392

Alternate gene names: 238921249

Gene position: 3278007-3279263 (Clockwise)

Preceding gene: 238921248

Following gene: 238921250

Centisome position: 85.98

GC content: 66.19

Gene sequence:

>1257_bases
ATGTTAGTTATTGCCGGTATTGCAATCCTGATCCTGACGGTGATCCTGCTGATCAAGCGCCAGGATACCCGCACCGTGCT
GCTGTTCTCCGGCCTGCTGATGTGCCTGCTGGCCGCCGATCCGATGGCGGCGATGAACAGCTTTGCCCAGAAGATGGTCT
CCGAGGGGCTGATCCAGGCGATCCTGTCGGCCATCGGCTTCGCCACCGTGATGAAGTTTACCGGCTGTGACCGCCACCTG
GTGCGCCTGCTGAGTGTACCGCTGCGCCGCGTCGGTCTGCTGCTGATCCCCGGCACCATTCTGCTGACCACCTTCGTCCA
GCTGGCGCTGCCCAGCGCCGCCGGGGCCGCCGCCGCCGCCGGTATCACCATGATCCCGCTGCAGCTGGCGGCGGGTATCC
ACCCGGTGATGGCCGGCGCCGCGGTGCTGGCGGGCACCTTCGGCGCCAGCCTGCTCAATCCGGGCAGTCCGCACATGGCC
CTGGTGGCCAAAATCGTCGGCGGCGACGTGATGACCATCATCGGCTCACGCGCCATGACCGTGGTGTGGCTGGGGCTGCT
GATCATGGTCGGCATGACGCTGACCGCCCTGCTGCGCCGTGAACATCGCGGCTATCACTCAACGCTGGAAAGCGAAATGC
AGGCCGACCACCAACCGATCAACCTGCTGGCCGCACTGATGCCGCTGCTGCCGGTCACCCTGCTGATGCTCGGCGCCTTC
GGCGGCGTAGGCTGGCTGAAGATGGGGGTTCCGCAGGCGGTCATGTGGGGGATCCTCGCCACCCTGCTGGTCACCCGCAC
CCACCCAGGCAAAGCGATTCCGGCCTTCTTCGACGGCATGGGTAAAGCCTACAGCGACGTATTCGGCATTATCATCTGCG
CCGGGGTCTTCGTGGCCGGTCTGAGCGCCATTGGGCTTATCGATGCCGCCAAAACGCTGCTGATCGACTACCCGCAGGCT
GCCCGCTTCGGCGGCACCGTCGGCCCATTCCTGATGGCTATCGTGATAGGCTCCGGCGACGCCGCGGCCTACGCTTTCAA
CGAGGCCATTACCCCCCATGCCGCCGCCTTTGGCATGGACGGCACCAACCTGGGGACCGCCGCCGCCTTCGCCAGCTACC
TGGGGCGCACCGCCTCGCCGCTCTCCGCCGCGGCCATCGTGGTCGCCGGCATGGTCGGCGTCTCACCGCTCGATCTGGTC
AAGCGCACCGCACCGGTGATGCTGGTGGGGCTGCTGCTGCTGATTGTCCTGATCTGA

Upstream 100 bases:

>100_bases
GGCCGAGTTCGATGCCCTGCGTGCCCGGCTGGCGCAGGAGCCGCCCTACGATACGCAGCGCCACGTCATCTACCAACGCC
CTGTCTCGGGAGACTAAACC

Downstream 100 bases:

>100_bases
GTCCGCCCACGGCATATCCAGACGAGATTGCCGTCACATATCTCACCGCGACACACCCGGTCGGGACATTTGTCCCGGCC
GGGTGTGTAATATCAGAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MLVIAGIAILILTVILLIKRQDTRTVLLFSGLLMCLLAADPMAAMNSFAQKMVSEGLIQAILSAIGFATVMKFTGCDRHL
VRLLSVPLRRVGLLLIPGTILLTTFVQLALPSAAGAAAAAGITMIPLQLAAGIHPVMAGAAVLAGTFGASLLNPGSPHMA
LVAKIVGGDVMTIIGSRAMTVVWLGLLIMVGMTLTALLRREHRGYHSTLESEMQADHQPINLLAALMPLLPVTLLMLGAF
GGVGWLKMGVPQAVMWGILATLLVTRTHPGKAIPAFFDGMGKAYSDVFGIIICAGVFVAGLSAIGLIDAAKTLLIDYPQA
ARFGGTVGPFLMAIVIGSGDAAAYAFNEAITPHAAAFGMDGTNLGTAAAFASYLGRTASPLSAAAIVVAGMVGVSPLDLV
KRTAPVMLVGLLLLIVLI

Sequences:

>Translated_418_residues
MLVIAGIAILILTVILLIKRQDTRTVLLFSGLLMCLLAADPMAAMNSFAQKMVSEGLIQAILSAIGFATVMKFTGCDRHL
VRLLSVPLRRVGLLLIPGTILLTTFVQLALPSAAGAAAAAGITMIPLQLAAGIHPVMAGAAVLAGTFGASLLNPGSPHMA
LVAKIVGGDVMTIIGSRAMTVVWLGLLIMVGMTLTALLRREHRGYHSTLESEMQADHQPINLLAALMPLLPVTLLMLGAF
GGVGWLKMGVPQAVMWGILATLLVTRTHPGKAIPAFFDGMGKAYSDVFGIIICAGVFVAGLSAIGLIDAAKTLLIDYPQA
ARFGGTVGPFLMAIVIGSGDAAAYAFNEAITPHAAAFGMDGTNLGTAAAFASYLGRTASPLSAAAIVVAGMVGVSPLDLV
KRTAPVMLVGLLLLIVLI
>Mature_418_residues
MLVIAGIAILILTVILLIKRQDTRTVLLFSGLLMCLLAADPMAAMNSFAQKMVSEGLIQAILSAIGFATVMKFTGCDRHL
VRLLSVPLRRVGLLLIPGTILLTTFVQLALPSAAGAAAAAGITMIPLQLAAGIHPVMAGAAVLAGTFGASLLNPGSPHMA
LVAKIVGGDVMTIIGSRAMTVVWLGLLIMVGMTLTALLRREHRGYHSTLESEMQADHQPINLLAALMPLLPVTLLMLGAF
GGVGWLKMGVPQAVMWGILATLLVTRTHPGKAIPAFFDGMGKAYSDVFGIIICAGVFVAGLSAIGLIDAAKTLLIDYPQA
ARFGGTVGPFLMAIVIGSGDAAAYAFNEAITPHAAAFGMDGTNLGTAAAFASYLGRTASPLSAAAIVVAGMVGVSPLDLV
KRTAPVMLVGLLLLIVLI

Specific function: Cryptic C4-dicarboxylate carrier [C]

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=455, Percent_Identity=26.3736263736264, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 43077; Mature: 43077

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVIAGIAILILTVILLIKRQDTRTVLLFSGLLMCLLAADPMAAMNSFAQKMVSEGLIQA
CEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ILSAIGFATVMKFTGCDRHLVRLLSVPLRRVGLLLIPGTILLTTFVQLALPSAAGAAAAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHC
GITMIPLQLAAGIHPVMAGAAVLAGTFGASLLNPGSPHMALVAKIVGGDVMTIIGSRAMT
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
VVWLGLLIMVGMTLTALLRREHRGYHSTLESEMQADHQPINLLAALMPLLPVTLLMLGAF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GGVGWLKMGVPQAVMWGILATLLVTRTHPGKAIPAFFDGMGKAYSDVFGIIICAGVFVAG
CCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAIGLIDAAKTLLIDYPQAARFGGTVGPFLMAIVIGSGDAAAYAFNEAITPHAAAFGMD
HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCCC
GTNLGTAAAFASYLGRTASPLSAAAIVVAGMVGVSPLDLVKRTAPVMLVGLLLLIVLI
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLVIAGIAILILTVILLIKRQDTRTVLLFSGLLMCLLAADPMAAMNSFAQKMVSEGLIQA
CEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ILSAIGFATVMKFTGCDRHLVRLLSVPLRRVGLLLIPGTILLTTFVQLALPSAAGAAAAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHC
GITMIPLQLAAGIHPVMAGAAVLAGTFGASLLNPGSPHMALVAKIVGGDVMTIIGSRAMT
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
VVWLGLLIMVGMTLTALLRREHRGYHSTLESEMQADHQPINLLAALMPLLPVTLLMLGAF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GGVGWLKMGVPQAVMWGILATLLVTRTHPGKAIPAFFDGMGKAYSDVFGIIICAGVFVAG
CCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAIGLIDAAKTLLIDYPQAARFGGTVGPFLMAIVIGSGDAAAYAFNEAITPHAAAFGMD
HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCCC
GTNLGTAAAFASYLGRTASPLSAAAIVVAGMVGVSPLDLVKRTAPVMLVGLLLLIVLI
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]