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The map label for this gene is ygiK [H]

Identifier: 238921243

GI number: 238921243

Start: 3272601

End: 3273902

Strand: Reverse

Name: ygiK [H]

Synonym: NT01EI_3386

Alternate gene names: 238921243

Gene position: 3273902-3272601 (Counterclockwise)

Preceding gene: 238921244

Following gene: 238921242

Centisome position: 85.88

GC content: 57.91

Gene sequence:

>1302_bases
ATGGAGAGCTATATCGCCCTGACCCTGTTTGGCAGCTTCTTCTTTCTGGTGTTTGTCGGTGTGCCGATTTCATTCTCTAT
CGGTATCGCCACCTTTGCCTCCATGCTGCTGATGTTTCCGTGGGAGATCGCTACCATTACCGTCGCGCAGCGTCTGGCCA
ACGGGCTGGATAACTTTGCGCTGCTGGCAATACCGTTCTTTATCTTTGCCGGCACGTTGATGAACAGCGGCGGTATCGCC
ATTCGATTGATCAACCTGGCACAGGTGATGGTAGGACGTGTGCCCGGCTCCCTGGGGCACGTTAACGTGCTGGCCAACAT
GATGTTCGGCTCCATCTCCGGCTCGGCGGTGGCAGCGGCGGCGGCGGTTGGCGGTACGTTGCACCCTATCCAGACCCGTG
ACGGTTATGATCCGGCCTTCTCTACGGCGGTTAACGTCTCATCCTGTATTACCGGGCTGTTGATCCCGCCGTCCAACGTA
CTGATCGTCTTCTCCCTGACCGCTGGCGGCGTGTCTGTGGCGTCGCTGTTCCTGGCTGGTTATCTGCCGGGGATACTGAT
GGGGCTGTCGATCATGGTGGTGTGCGCCTTTATCGCCAAGGCACGGAACTATCCGGTCAGCGCGCGCCCGACCCTGCGTC
AGGCGGGTAAAGCTTTCTGGGATGCCTGGCCCAGCCTGCTGCTGGTATTCATCGTGATGGGCGGGATCCTCGGTGGTGTC
TTTACCGCGACCGAAGCCTCGGCGATCGCCGTGGTGTACACCTTTGTGCTGTCGGTGCTGATTTACCGCGAGGTAAAGTG
GCGCGATTTGCCGCGGCTGATCCTGGAGTCGGTGGTGACGACCTCCATCGTACTGCTGCTGATTGGCTTCTCCGTCGGCA
TGTCCTGGGCGATGACCAACGCGGATATCCCTTACATGATCAGCGATGCGCTGATGGGGATTTCGGAAAACCCGATTGTC
ATCCTGCTGCTGATCAACATTGTGCTGCTGATCGTCGGTATCTTTATGGATATGACCCCGGCGGTTCTGATCTTTACCCC
GATCTTCCTGCCGATCGCACAGGAGCTGGGGATGGATCCGGTACATTTCGGTATCATGATGGTGGCTAACCTGTGTATCG
GCTTGCTGACGCCGCCGGTCGGGAGCGCCCTGTTCGTCGGCTGCTCTATCTCCGGGGTGAAGATCCAGCAGCTGATTAAG
CCACTGCTGCCCTTCTACCTGGCACTGATTGTCTCGCTGATGATGATCACCTATATCCCGCAGATCTCCCTGTTTGTGCC
GCAGCTGTTTGGCCTGATGTAA

Upstream 100 bases:

>100_bases
TTATTCTGCCGCTGAGCGGCGCCATCATCATTTTTTATAGTCTGTACTTTGTGATCAGTGGAATGAAGAAACTGGCCATC
CCGCAAGGAGTGAATAACTG

Downstream 100 bases:

>100_bases
GCGGAGTTACGATCCGAAAGGCAGAGTTTATCTCTGCCTTTTTTATTCGTTCGGCGTGGCGGATAGGCCAGTCCGGGTTA
CGCAGTGAGATACGGGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MESYIALTLFGSFFFLVFVGVPISFSIGIATFASMLLMFPWEIATITVAQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLHPIQTRDGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFLAGYLPGILMGLSIMVVCAFIAKARNYPVSARPTLRQAGKAFWDAWPSLLLVFIVMGGILGGV
FTATEASAIAVVYTFVLSVLIYREVKWRDLPRLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISENPIV
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQQLIK
PLLPFYLALIVSLMMITYIPQISLFVPQLFGLM

Sequences:

>Translated_433_residues
MESYIALTLFGSFFFLVFVGVPISFSIGIATFASMLLMFPWEIATITVAQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLHPIQTRDGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFLAGYLPGILMGLSIMVVCAFIAKARNYPVSARPTLRQAGKAFWDAWPSLLLVFIVMGGILGGV
FTATEASAIAVVYTFVLSVLIYREVKWRDLPRLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISENPIV
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQQLIK
PLLPFYLALIVSLMMITYIPQISLFVPQLFGLM
>Mature_433_residues
MESYIALTLFGSFFFLVFVGVPISFSIGIATFASMLLMFPWEIATITVAQRLANGLDNFALLAIPFFIFAGTLMNSGGIA
IRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAAAAVGGTLHPIQTRDGYDPAFSTAVNVSSCITGLLIPPSNV
LIVFSLTAGGVSVASLFLAGYLPGILMGLSIMVVCAFIAKARNYPVSARPTLRQAGKAFWDAWPSLLLVFIVMGGILGGV
FTATEASAIAVVYTFVLSVLIYREVKWRDLPRLILESVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISENPIV
ILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQQLIK
PLLPFYLALIVSLMMITYIPQISLFVPQLFGLM

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=405, Percent_Identity=36.7901234567901, Blast_Score=235, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46101; Mature: 46101

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYIALTLFGSFFFLVFVGVPISFSIGIATFASMLLMFPWEIATITVAQRLANGLDNFA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
LLAIPFFIFAGTLMNSGGIAIRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAA
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAVGGTLHPIQTRDGYDPAFSTAVNVSSCITGLLIPPSNVLIVFSLTAGGVSVASLFLAG
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEECCCCEEEEEEECCCHHHHHHHHHHH
YLPGILMGLSIMVVCAFIAKARNYPVSARPTLRQAGKAFWDAWPSLLLVFIVMGGILGGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFVLSVLIYREVKWRDLPRLILESVVTTSIVLLLIGFSVGMSWAMTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
ADIPYMISDALMGISENPIVILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDP
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
VHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQQLIKPLLPFYLALIVSLMMITYIP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QISLFVPQLFGLM
HHHHHHHHHHCCC
>Mature Secondary Structure
MESYIALTLFGSFFFLVFVGVPISFSIGIATFASMLLMFPWEIATITVAQRLANGLDNFA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
LLAIPFFIFAGTLMNSGGIAIRLINLAQVMVGRVPGSLGHVNVLANMMFGSISGSAVAAA
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHH
AAVGGTLHPIQTRDGYDPAFSTAVNVSSCITGLLIPPSNVLIVFSLTAGGVSVASLFLAG
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEECCCCEEEEEEECCCHHHHHHHHHHH
YLPGILMGLSIMVVCAFIAKARNYPVSARPTLRQAGKAFWDAWPSLLLVFIVMGGILGGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFVLSVLIYREVKWRDLPRLILESVVTTSIVLLLIGFSVGMSWAMTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECC
ADIPYMISDALMGISENPIVILLLINIVLLIVGIFMDMTPAVLIFTPIFLPIAQELGMDP
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
VHFGIMMVANLCIGLLTPPVGSALFVGCSISGVKIQQLIKPLLPFYLALIVSLMMITYIP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QISLFVPQLFGLM
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]