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The map label for this gene is shlB [H]

Identifier: 238921189

GI number: 238921189

Start: 3217125

End: 3218867

Strand: Reverse

Name: shlB [H]

Synonym: NT01EI_3330

Alternate gene names: 238921189

Gene position: 3218867-3217125 (Counterclockwise)

Preceding gene: 238921190

Following gene: 238921188

Centisome position: 84.43

GC content: 52.09

Gene sequence:

>1743_bases
ATGTATCATTGCCACTTTTTTAATGTGTCCAAACCACAATCCACCAGAATAAGTATAATATTAATAAAAATAACGCTATT
TCTTCCGGCGAGTGTATTGCTCCTCCCTGAGTCATCCCAGGCAGCACCGGCAACATCCACCATAAGTCAGCCACTTATTA
ATCAACAACAGCGTCAACAGGCACTTGAACAGCAAATAACGCCAGTGGCACCCGATATCCGCTTTGCCCCTCCACTAACG
CCAACGCCTAAAAATGGGTTCCCGACGGAGGTTCTCTGCTTCCCTATTTCGCAGGTTCGTCTCAGTGGTACTGAAGCGTT
ACCCCACTGGTTGCCATTACAGCACCTTGCCAATCAGGCCATCGGCCATTGTCTGGGGGTAAAGGGCATCAATCTGCTGA
TGGCGCGTTTGCAGAATAGGTTAATCGATCATGGATGGGTAACGACCCAGGTTCTGGCACCGCAGCAAGCGTTAACGTCC
GGCACGCTCCACTTGGTTATTTTGGCCGGTTTTGTCCATGATGTTCGCCTGACCCCAGACAGCAGTACCTACGCGACACT
GTATACGGCATTCCCGGCTCACCGTGGCAATGTCCTGGATTTGCGTGATATCGAGCAAGGTCTTGAAAATCTGCAACGCT
TGCCGACGGTGAGTACCAGTATGGATATCGTTCCCGGTGAGCGGCCGGGCGAAAGTGATATCGTCATCAAACGCCATCAA
TCACGCCTATGGCGTGTGGATGCCTCACTGGATAATTCAGGGGCAACATCGACGGGGAAATATCTCGGGATGCTGACGGC
ATCACTGGATAATCCCTTATCGTTAAGTGATCTCTTTTACCTCTCGGGCTCCCATAATCTGGATGGTAATGGGAGTGGTA
AATCATCAGAAAGCCTGACTGCGCATTATTCTGTCCCTTTTGGTTATTGGCTAATGGGAGCAACGGCGAGCCGGTACAAC
TATGTTCAAACCGTTGCAGGACTCAATGGTGATTATCAGTACAGTGGTAACAGCAAAGATATCGACATTCAGGTCAGCTA
CTTACTGCATCGTAACAGTAACCAGAAAACGACCCTGACAGCCGATGTGATGGCCCGTGAGCAGCATAACGTTATCAATG
ATACCGAGATAGATGTACAACGCCGCCAGACTGCAGCCTGGAAGTTAGGTTTACAGCATCGCCACTACATCGGTAGCACT
ATTCTGGATGCCGGCATGAGTTACCAGCGGGGAACACGCTGGCTGGGGGCAAGTCCTGCACCGGAGGAGTTCTGGGGAGA
GGCAACGGCGCTCAGTAAAATTCTCCAGATGAGTGCGCAACTAACCCTCCCTTTCTCGGTTGCAGAGCAACACTTTCAGT
TTAACACCCATTATTTTCGCCAAATGAGTAATACGCCGCTGACACCACCGGACATGTTATCCATTGGCAACCGTTGGACG
GTGCGCGGCTTTGATGGCGAACGGACGCTAACCGCCAGCCATGGCTGGTATGTAAGGAATACGCTCGCATGGGCGACACC
GCTACCGGCACAAGAGCTCTATATCGGCGCCGACTACGGTGAGGTTGGCGGACGCGGTGAGGAAACCCTGGTGGGTAACC
ATCTGGCCGGAGGCGTTGTTGGCCTGCGCGGGCAGTACCGCCAGGCCGGTTACGACCTGTTTGCGGGGACTCCGTTATCC
AAGCCTGATGGGCTGAAAACAGATTCGGTAACGGTCGGATTCAGCCTCAACTGGAGTTATTGA

Upstream 100 bases:

>100_bases
AATATTGATTAATTACTTACTCCTTAATCTGGCAGGCATGTTCACCTAATGTAATATGAGGTGGTAACTCATTTTCATTA
TTATCGGGGCATATAAAGAG

Downstream 100 bases:

>100_bases
TGGAGTGGCATGGATTTACCGTACAGTGCCCGCTGGTGCTGGGCGGTAGCGTGAACGAAGCCGAAGTATTGGGCGCCACC
GTCTGGCTGTGGATGCACTC

Product: polypeptide-transport-associated domain protein ShlB-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MYHCHFFNVSKPQSTRISIILIKITLFLPASVLLLPESSQAAPATSTISQPLINQQQRQQALEQQITPVAPDIRFAPPLT
PTPKNGFPTEVLCFPISQVRLSGTEALPHWLPLQHLANQAIGHCLGVKGINLLMARLQNRLIDHGWVTTQVLAPQQALTS
GTLHLVILAGFVHDVRLTPDSSTYATLYTAFPAHRGNVLDLRDIEQGLENLQRLPTVSTSMDIVPGERPGESDIVIKRHQ
SRLWRVDASLDNSGATSTGKYLGMLTASLDNPLSLSDLFYLSGSHNLDGNGSGKSSESLTAHYSVPFGYWLMGATASRYN
YVQTVAGLNGDYQYSGNSKDIDIQVSYLLHRNSNQKTTLTADVMAREQHNVINDTEIDVQRRQTAAWKLGLQHRHYIGST
ILDAGMSYQRGTRWLGASPAPEEFWGEATALSKILQMSAQLTLPFSVAEQHFQFNTHYFRQMSNTPLTPPDMLSIGNRWT
VRGFDGERTLTASHGWYVRNTLAWATPLPAQELYIGADYGEVGGRGEETLVGNHLAGGVVGLRGQYRQAGYDLFAGTPLS
KPDGLKTDSVTVGFSLNWSY

Sequences:

>Translated_580_residues
MYHCHFFNVSKPQSTRISIILIKITLFLPASVLLLPESSQAAPATSTISQPLINQQQRQQALEQQITPVAPDIRFAPPLT
PTPKNGFPTEVLCFPISQVRLSGTEALPHWLPLQHLANQAIGHCLGVKGINLLMARLQNRLIDHGWVTTQVLAPQQALTS
GTLHLVILAGFVHDVRLTPDSSTYATLYTAFPAHRGNVLDLRDIEQGLENLQRLPTVSTSMDIVPGERPGESDIVIKRHQ
SRLWRVDASLDNSGATSTGKYLGMLTASLDNPLSLSDLFYLSGSHNLDGNGSGKSSESLTAHYSVPFGYWLMGATASRYN
YVQTVAGLNGDYQYSGNSKDIDIQVSYLLHRNSNQKTTLTADVMAREQHNVINDTEIDVQRRQTAAWKLGLQHRHYIGST
ILDAGMSYQRGTRWLGASPAPEEFWGEATALSKILQMSAQLTLPFSVAEQHFQFNTHYFRQMSNTPLTPPDMLSIGNRWT
VRGFDGERTLTASHGWYVRNTLAWATPLPAQELYIGADYGEVGGRGEETLVGNHLAGGVVGLRGQYRQAGYDLFAGTPLS
KPDGLKTDSVTVGFSLNWSY
>Mature_580_residues
MYHCHFFNVSKPQSTRISIILIKITLFLPASVLLLPESSQAAPATSTISQPLINQQQRQQALEQQITPVAPDIRFAPPLT
PTPKNGFPTEVLCFPISQVRLSGTEALPHWLPLQHLANQAIGHCLGVKGINLLMARLQNRLIDHGWVTTQVLAPQQALTS
GTLHLVILAGFVHDVRLTPDSSTYATLYTAFPAHRGNVLDLRDIEQGLENLQRLPTVSTSMDIVPGERPGESDIVIKRHQ
SRLWRVDASLDNSGATSTGKYLGMLTASLDNPLSLSDLFYLSGSHNLDGNGSGKSSESLTAHYSVPFGYWLMGATASRYN
YVQTVAGLNGDYQYSGNSKDIDIQVSYLLHRNSNQKTTLTADVMAREQHNVINDTEIDVQRRQTAAWKLGLQHRHYIGST
ILDAGMSYQRGTRWLGASPAPEEFWGEATALSKILQMSAQLTLPFSVAEQHFQFNTHYFRQMSNTPLTPPDMLSIGNRWT
VRGFDGERTLTASHGWYVRNTLAWATPLPAQELYIGADYGEVGGRGEETLVGNHLAGGVVGLRGQYRQAGYDLFAGTPLS
KPDGLKTDSVTVGFSLNWSY

Specific function: Member of a two partner secretion pathway (TPS) in which it mediates the secretion of hemolysin [H]

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tpsB (TC 1.B.20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005565
- InterPro:   IPR013686 [H]

Pfam domain/function: PF08479 POTRA_2; PF03865 ShlB [H]

EC number: NA

Molecular weight: Translated: 63893; Mature: 63893

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00287 CYSTATIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHCHFFNVSKPQSTRISIILIKITLFLPASVLLLPESSQAAPATSTISQPLINQQQRQQ
CEEEEEEECCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHH
ALEQQITPVAPDIRFAPPLTPTPKNGFPTEVLCFPISQVRLSGTEALPHWLPLQHLANQA
HHHHCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEHHHHEECCCCCCCCCCCHHHHHHHH
IGHCLGVKGINLLMARLQNRLIDHGWVTTQVLAPQQALTSGTLHLVILAGFVHDVRLTPD
HHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEEEHHHHEEEECCC
SSTYATLYTAFPAHRGNVLDLRDIEQGLENLQRLPTVSTSMDIVPGERPGESDIVIKRHQ
CCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEECC
SRLWRVDASLDNSGATSTGKYLGMLTASLDNPLSLSDLFYLSGSHNLDGNGSGKSSESLT
CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
AHYSVPFGYWLMGATASRYNYVQTVAGLNGDYQYSGNSKDIDIQVSYLLHRNSNQKTTLT
EEEECCHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEEECCCCCCEEEE
ADVMAREQHNVINDTEIDVQRRQTAAWKLGLQHRHYIGSTILDAGMSYQRGTRWLGASPA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCEECCCCCC
PEEFWGEATALSKILQMSAQLTLPFSVAEQHFQFNTHYFRQMSNTPLTPPDMLSIGNRWT
CHHHCCHHHHHHHHHHHHHCEECCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCCCEEE
VRGFDGERTLTASHGWYVRNTLAWATPLPAQELYIGADYGEVGGRGEETLVGNHLAGGVV
EEECCCCEEEEECCCEEEECEEEECCCCCHHHEEEECCCCCCCCCCCCEEECCCCCCCEE
GLRGQYRQAGYDLFAGTPLSKPDGLKTDSVTVGFSLNWSY
ECCCCHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MYHCHFFNVSKPQSTRISIILIKITLFLPASVLLLPESSQAAPATSTISQPLINQQQRQQ
CEEEEEEECCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHH
ALEQQITPVAPDIRFAPPLTPTPKNGFPTEVLCFPISQVRLSGTEALPHWLPLQHLANQA
HHHHCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEHHHHEECCCCCCCCCCCHHHHHHHH
IGHCLGVKGINLLMARLQNRLIDHGWVTTQVLAPQQALTSGTLHLVILAGFVHDVRLTPD
HHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEEEHHHHEEEECCC
SSTYATLYTAFPAHRGNVLDLRDIEQGLENLQRLPTVSTSMDIVPGERPGESDIVIKRHQ
CCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEECC
SRLWRVDASLDNSGATSTGKYLGMLTASLDNPLSLSDLFYLSGSHNLDGNGSGKSSESLT
CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
AHYSVPFGYWLMGATASRYNYVQTVAGLNGDYQYSGNSKDIDIQVSYLLHRNSNQKTTLT
EEEECCHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEEEEECCCCCCEEEE
ADVMAREQHNVINDTEIDVQRRQTAAWKLGLQHRHYIGSTILDAGMSYQRGTRWLGASPA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCEECCCCCC
PEEFWGEATALSKILQMSAQLTLPFSVAEQHFQFNTHYFRQMSNTPLTPPDMLSIGNRWT
CHHHCCHHHHHHHHHHHHHCEECCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCCCEEE
VRGFDGERTLTASHGWYVRNTLAWATPLPAQELYIGADYGEVGGRGEETLVGNHLAGGVV
EEECCCCEEEEECCCEEEECEEEECCCCCHHHEEEECCCCCCCCCCCCEEECCCCCCCEE
GLRGQYRQAGYDLFAGTPLSKPDGLKTDSVTVGFSLNWSY
ECCCCHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3290200 [H]