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The map label for this gene is hypD [H]

Identifier: 238921144

GI number: 238921144

Start: 3163765

End: 3164883

Strand: Direct

Name: hypD [H]

Synonym: NT01EI_3285

Alternate gene names: 238921144

Gene position: 3163765-3164883 (Clockwise)

Preceding gene: 238921143

Following gene: 238921145

Centisome position: 82.99

GC content: 63.36

Gene sequence:

>1119_bases
ATGCAGTTTGTTGATGAATTCCGCGATCCCCGGCTGGCGGAGGCGCTGCTGACGAAGATCCGCCAGCGCGTCAGCCAGCT
GCCGGCCTCCTGCCGTCTGCCGCTGCAGATCATGGAGGTGTGCGGTGGACATACCCACGCCATCTTCAAGTTTGGCCTCG
ATCAGCTGCTGCCCAAAGAGATCGAGTTCGTACACGGCCCGGGCTGTCCGGTCTGCGTACTGCCGATGGGACGTATCGAC
CAGTGCGTGGAGATCGCCCGCCGCCCCGGTGTGGTATTCTGCACCTTTGGCGATGCCATGCGTGTACCGGGCCGCAGCGG
CTCCCTGCTCGACGCCAAGCGTCAGGGGGCGGACGTACGCATCGTTTACTCTCCCCTCGATGCGCTGAATCTGGCGCAGC
AGATGCCGGATCGCGAGGTGGTCTTCTTCGGCCTTGGCTTTGAGACCACCATGCCCAGCACTGCCGTCACCCTGCAGCAG
GCACGTGCCCAGAACGTGAAAAACTTCAGCGTCTTCTGCCAGCACATCACCATTACCCCGACGCTGCGCAGCCTGCTGCT
GCAGCCCGACGTGCGCATCGATGGCTTCATTGCGCCGGGACACGTCAGCATGGTGATCGGCGCCGATCCCTACGCCTTTA
TCTGCGATGAGTTTCACAAGCCGCTGGTGATCACCGGCTTTGAGCCGCTGGATATCCTGCAGTCTCTGGATATGCTGCTG
GCTCAGGTGTGCGAAGGGTGCTGCGAGGTGGAAAACCAGTACCGCCGCATCGTCCCGGACAGCGGTAACGCCCTGGCGCA
GCGGGCGCTGGATGAGGTGTTTGTCACCCGTGACAGCAGCGAATGGCGCGGTCTCGGCGAAATCGCACACTCCGGGGTGG
CCCTGAGCCCGGCCTACGCCGAGTTTGACGCCGAGCGGCGTTTTCACCCCCGCCGTCAGCGCGTGGCTGACGATCCGCTC
GCCCGCTGCGGCGATGTACTGACCGGACGCTGCAAACCGGCGGAGTGCCCGCTGTTCGGCACCCGCTGTAATCCCCAGAA
TGCCTTTGGCGCGCTGATGGTCTCTTCAGAAGGAGCCTGCGCGGCGTTCTACCAATATCGTCGAGGAATGGAGCAATAA

Upstream 100 bases:

>100_bases
GGATACGCTGGAAGCGCTGAAGTCCATGGAAGCGGTAGAGGCCGACGTGGCGCACTTTATGCGCGTCGGTGCCGGCGCGG
CGCGCAGCGGAGAGTGATAA

Downstream 100 bases:

>100_bases
GCATGAGCAAATGGTCTGAAGACGATGTGATTACCATGGCGCACGGTAGCGGCGGCCTGGCGATGCAACAGCTGCTTGAT
ACCCTGTTTTTACCGCTGTT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MQFVDEFRDPRLAEALLTKIRQRVSQLPASCRLPLQIMEVCGGHTHAIFKFGLDQLLPKEIEFVHGPGCPVCVLPMGRID
QCVEIARRPGVVFCTFGDAMRVPGRSGSLLDAKRQGADVRIVYSPLDALNLAQQMPDREVVFFGLGFETTMPSTAVTLQQ
ARAQNVKNFSVFCQHITITPTLRSLLLQPDVRIDGFIAPGHVSMVIGADPYAFICDEFHKPLVITGFEPLDILQSLDMLL
AQVCEGCCEVENQYRRIVPDSGNALAQRALDEVFVTRDSSEWRGLGEIAHSGVALSPAYAEFDAERRFHPRRQRVADDPL
ARCGDVLTGRCKPAECPLFGTRCNPQNAFGALMVSSEGACAAFYQYRRGMEQ

Sequences:

>Translated_372_residues
MQFVDEFRDPRLAEALLTKIRQRVSQLPASCRLPLQIMEVCGGHTHAIFKFGLDQLLPKEIEFVHGPGCPVCVLPMGRID
QCVEIARRPGVVFCTFGDAMRVPGRSGSLLDAKRQGADVRIVYSPLDALNLAQQMPDREVVFFGLGFETTMPSTAVTLQQ
ARAQNVKNFSVFCQHITITPTLRSLLLQPDVRIDGFIAPGHVSMVIGADPYAFICDEFHKPLVITGFEPLDILQSLDMLL
AQVCEGCCEVENQYRRIVPDSGNALAQRALDEVFVTRDSSEWRGLGEIAHSGVALSPAYAEFDAERRFHPRRQRVADDPL
ARCGDVLTGRCKPAECPLFGTRCNPQNAFGALMVSSEGACAAFYQYRRGMEQ
>Mature_372_residues
MQFVDEFRDPRLAEALLTKIRQRVSQLPASCRLPLQIMEVCGGHTHAIFKFGLDQLLPKEIEFVHGPGCPVCVLPMGRID
QCVEIARRPGVVFCTFGDAMRVPGRSGSLLDAKRQGADVRIVYSPLDALNLAQQMPDREVVFFGLGFETTMPSTAVTLQQ
ARAQNVKNFSVFCQHITITPTLRSLLLQPDVRIDGFIAPGHVSMVIGADPYAFICDEFHKPLVITGFEPLDILQSLDMLL
AQVCEGCCEVENQYRRIVPDSGNALAQRALDEVFVTRDSSEWRGLGEIAHSGVALSPAYAEFDAERRFHPRRQRVADDPL
ARCGDVLTGRCKPAECPLFGTRCNPQNAFGALMVSSEGACAAFYQYRRGMEQ

Specific function: Required for the formation of all three hydrogenase isoenzymes [H]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=368, Percent_Identity=68.4782608695652, Blast_Score=534, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41206; Mature: 41206

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFVDEFRDPRLAEALLTKIRQRVSQLPASCRLPLQIMEVCGGHTHAIFKFGLDQLLPKE
CCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCHHHHCHHH
IEFVHGPGCPVCVLPMGRIDQCVEIARRPGVVFCTFGDAMRVPGRSGSLLDAKRQGADVR
HCEEECCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCCHHHHCCCCEE
IVYSPLDALNLAQQMPDREVVFFGLGFETTMPSTAVTLQQARAQNVKNFSVFCQHITITP
EEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHEEECH
TLRSLLLQPDVRIDGFIAPGHVSMVIGADPYAFICDEFHKPLVITGFEPLDILQSLDMLL
HHHHHHCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
AQVCEGCCEVENQYRRIVPDSGNALAQRALDEVFVTRDSSEWRGLGEIAHSGVALSPAYA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCHHH
EFDAERRFHPRRQRVADDPLARCGDVLTGRCKPAECPLFGTRCNPQNAFGALMVSSEGAC
HHCHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCH
AAFYQYRRGMEQ
HHHHHHHCCCCC
>Mature Secondary Structure
MQFVDEFRDPRLAEALLTKIRQRVSQLPASCRLPLQIMEVCGGHTHAIFKFGLDQLLPKE
CCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCHHHHCHHH
IEFVHGPGCPVCVLPMGRIDQCVEIARRPGVVFCTFGDAMRVPGRSGSLLDAKRQGADVR
HCEEECCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCCHHHHCCCCEE
IVYSPLDALNLAQQMPDREVVFFGLGFETTMPSTAVTLQQARAQNVKNFSVFCQHITITP
EEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHEEECH
TLRSLLLQPDVRIDGFIAPGHVSMVIGADPYAFICDEFHKPLVITGFEPLDILQSLDMLL
HHHHHHCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
AQVCEGCCEVENQYRRIVPDSGNALAQRALDEVFVTRDSSEWRGLGEIAHSGVALSPAYA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCHHH
EFDAERRFHPRRQRVADDPLARCGDVLTGRCKPAECPLFGTRCNPQNAFGALMVSSEGAC
HHCHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCH
AAFYQYRRGMEQ
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1849603; 9278503 [H]