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The map label for this gene is ygdQ [H]

Identifier: 238921122

GI number: 238921122

Start: 3139109

End: 3139825

Strand: Direct

Name: ygdQ [H]

Synonym: NT01EI_3261

Alternate gene names: 238921122

Gene position: 3139109-3139825 (Clockwise)

Preceding gene: 238921121

Following gene: 238921127

Centisome position: 82.34

GC content: 57.32

Gene sequence:

>717_bases
ATGTTTGCGTGGATTGCCGATCCTAACGCCTGGCTGGCGTTGGGGACCTTAACGATTCTGGAAATCGTTCTGGGCATCGA
TAACATCATCTTCCTCTCCCTGGTGGTGGCCAAGCTGCCCAAGAAACAGCAAAACAAAGCGCGCCGCATCGGCCTGCTGG
CCGCCATGGGGATGCGCCTGTGCCTGCTGGCCTCGATCGCCTGGGTCGCCCATCTGGTACACCCACTGTTCACCCTGTTT
GGACACGCGGTCTCCGCCCGCGATCTGATCCTGCTGCTCGGCGGACTGTTCCTGATCTATAAGGCCAGTAAAGAGGTGCA
CGAGACCATCGAGGGCAGCAACGATAACCACGCTACCCACGTGCACTCCTTTATGGGGGCCATCGTGCAGATCATGATGC
TGGATATCATCTTTAGCCTGGACTCCGTGATCACCGCCATTGGACTGTCCGATCATCTGTTCATCATGATGGCGGCGGTG
ATCATCGCCGTGGGCGTGATGATGTTCGCCGCCCGGCCGATCGGCGAGTTTGTCGCCCGCCATCCGTCGGTCAAAATGCT
GGCATTGGCCTTCCTGATCCTGGTGGGATTCACCCTGATCCTGGAGAGCTTTGCGGTACACGTGCCCAAAGGTTACATCT
ACTTTGCCATGTTCTTCTCCATGGCGGTGGAAAGCCTCAACCTGATCCGTAACAAAAAGGCCAGCGACGGCGAATAA

Upstream 100 bases:

>100_bases
CTTTCTACTGTAAATTCTGTTTTACACCCCGCGAGCGCTGCGCAGCGGGACACTCTCGGTGTATAATTCCAGATTATGAT
TTTTTTAGGTATTTATCTCT

Downstream 100 bases:

>100_bases
GCCATGCGATACCAACGACAGAGGGGCGTAAACGTCCCTCTGTCTATCCCACCGAGCCTCTGTCTGTACCGCTCACTCCA
CGCAGTCCCTACGGCTCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MFAWIADPNAWLALGTLTILEIVLGIDNIIFLSLVVAKLPKKQQNKARRIGLLAAMGMRLCLLASIAWVAHLVHPLFTLF
GHAVSARDLILLLGGLFLIYKASKEVHETIEGSNDNHATHVHSFMGAIVQIMMLDIIFSLDSVITAIGLSDHLFIMMAAV
IIAVGVMMFAARPIGEFVARHPSVKMLALAFLILVGFTLILESFAVHVPKGYIYFAMFFSMAVESLNLIRNKKASDGE

Sequences:

>Translated_238_residues
MFAWIADPNAWLALGTLTILEIVLGIDNIIFLSLVVAKLPKKQQNKARRIGLLAAMGMRLCLLASIAWVAHLVHPLFTLF
GHAVSARDLILLLGGLFLIYKASKEVHETIEGSNDNHATHVHSFMGAIVQIMMLDIIFSLDSVITAIGLSDHLFIMMAAV
IIAVGVMMFAARPIGEFVARHPSVKMLALAFLILVGFTLILESFAVHVPKGYIYFAMFFSMAVESLNLIRNKKASDGE
>Mature_238_residues
MFAWIADPNAWLALGTLTILEIVLGIDNIIFLSLVVAKLPKKQQNKARRIGLLAAMGMRLCLLASIAWVAHLVHPLFTLF
GHAVSARDLILLLGGLFLIYKASKEVHETIEGSNDNHATHVHSFMGAIVQIMMLDIIFSLDSVITAIGLSDHLFIMMAAV
IIAVGVMMFAARPIGEFVARHPSVKMLALAFLILVGFTLILESFAVHVPKGYIYFAMFFSMAVESLNLIRNKKASDGE

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=233, Percent_Identity=81.1158798283262, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI87082033, Length=226, Percent_Identity=50.8849557522124, Blast_Score=227, Evalue=5e-61,
Organism=Escherichia coli, GI1788119, Length=232, Percent_Identity=46.9827586206897, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 26100; Mature: 26100

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAWIADPNAWLALGTLTILEIVLGIDNIIFLSLVVAKLPKKQQNKARRIGLLAAMGMRL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CLLASIAWVAHLVHPLFTLFGHAVSARDLILLLGGLFLIYKASKEVHETIEGSNDNHATH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VHSFMGAIVQIMMLDIIFSLDSVITAIGLSDHLFIMMAAVIIAVGVMMFAARPIGEFVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
HPSVKMLALAFLILVGFTLILESFAVHVPKGYIYFAMFFSMAVESLNLIRNKKASDGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFAWIADPNAWLALGTLTILEIVLGIDNIIFLSLVVAKLPKKQQNKARRIGLLAAMGMRL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
CLLASIAWVAHLVHPLFTLFGHAVSARDLILLLGGLFLIYKASKEVHETIEGSNDNHATH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VHSFMGAIVQIMMLDIIFSLDSVITAIGLSDHLFIMMAAVIIAVGVMMFAARPIGEFVAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
HPSVKMLALAFLILVGFTLILESFAVHVPKGYIYFAMFFSMAVESLNLIRNKKASDGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]