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The map label for this gene is ypjD [H]

Identifier: 238921090

GI number: 238921090

Start: 3101740

End: 3102528

Strand: Direct

Name: ypjD [H]

Synonym: NT01EI_3225

Alternate gene names: 238921090

Gene position: 3101740-3102528 (Clockwise)

Preceding gene: 238921084

Following gene: 238921091

Centisome position: 81.36

GC content: 57.29

Gene sequence:

>789_bases
ATGCCCGTATTTGCCATCATGGCCATGATCGCCTATCTGCTCAGTCTGGGACTGATTGTTCCCGGCCTGGCACGCAATAA
CCGCGCATACCGGCATCTGGCGCTGGCCTTTGCCGCCGCGGCGCTGCTGTGCCATGCCATCGCCCTCTACCAACGCATCT
TTGACGTCAGCGCAGGACAGAACCTCAGTTTGCTGAATATGGGATCATCGGTCAGCCTGCTGATTTGCCTGGTCATGTCC
GTGGTCGCCTCACGCGATCGCGGCTGGTTTCTACTGCCAATCGTCTACAGTTTTGCTCTGATCAACCTCGGACTGGCCAG
CTTTGTTCCCGGAGAGTTTATTACCCATCTGGAGGCCAGCCCCTCTCTGCTGTTCCATATCGGGCTGGCGCTATTTTCTT
ACGCCACGCTGATCATCGCCGCGCTGTATGCCTTTCAAGTGGCGTGGATGGATCACCTGCTGAAGAATAAAAAGCTGAGC
CTGCGCGCCGACATGCCGCCATTAATGAGCATTGAGCGCAAGATGTTCCACATTACCCTGGTAGGCGTGGTACTGCTGAC
CCTGACGCTGATTAGCGGAAGTCTGTATATGGAGCAGCTGTTCAGTTCCGAAAATATGCACAAGGCGCTGCTGTCGCTAT
TGGCTTGGTGCGTGTATATCATATTGCTGTGGGGGCACTATCGCCGGGGATGGCGGGGGCGTCCGGTCGTGTGGTGTAAC
CTGGCCGGCGCGGCGCTGCTGACGCTCGCCTACTTCGGCAGCCGGATCATTCTGGGTCTGGCGCAGTAA

Upstream 100 bases:

>100_bases
TCTCCCCCACGGCGCGCATTGGTCGGCGCCAGCAGTTGGAGCCTAGCGCCGCTGCAGCTATACTGAACGCCTCATTCACT
CAGCCATCAATGAACTCGCT

Downstream 100 bases:

>100_bases
TCTTACGCCCTCGCACCGATTTTCGCGCCCCCGCCTTCGTGCGGGGCTGACCGTTAACCACCATAAGGAACACCCGTTTG
GAGCACGTCTCGACCGGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPVFAIMAMIAYLLSLGLIVPGLARNNRAYRHLALAFAAAALLCHAIALYQRIFDVSAGQNLSLLNMGSSVSLLICLVMS
VVASRDRGWFLLPIVYSFALINLGLASFVPGEFITHLEASPSLLFHIGLALFSYATLIIAALYAFQVAWMDHLLKNKKLS
LRADMPPLMSIERKMFHITLVGVVLLTLTLISGSLYMEQLFSSENMHKALLSLLAWCVYIILLWGHYRRGWRGRPVVWCN
LAGAALLTLAYFGSRIILGLAQ

Sequences:

>Translated_262_residues
MPVFAIMAMIAYLLSLGLIVPGLARNNRAYRHLALAFAAAALLCHAIALYQRIFDVSAGQNLSLLNMGSSVSLLICLVMS
VVASRDRGWFLLPIVYSFALINLGLASFVPGEFITHLEASPSLLFHIGLALFSYATLIIAALYAFQVAWMDHLLKNKKLS
LRADMPPLMSIERKMFHITLVGVVLLTLTLISGSLYMEQLFSSENMHKALLSLLAWCVYIILLWGHYRRGWRGRPVVWCN
LAGAALLTLAYFGSRIILGLAQ
>Mature_261_residues
PVFAIMAMIAYLLSLGLIVPGLARNNRAYRHLALAFAAAALLCHAIALYQRIFDVSAGQNLSLLNMGSSVSLLICLVMSV
VASRDRGWFLLPIVYSFALINLGLASFVPGEFITHLEASPSLLFHIGLALFSYATLIIAALYAFQVAWMDHLLKNKKLSL
RADMPPLMSIERKMFHITLVGVVLLTLTLISGSLYMEQLFSSENMHKALLSLLAWCVYIILLWGHYRRGWRGRPVVWCNL
AGAALLTLAYFGSRIILGLAQ

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=258, Percent_Identity=68.6046511627907, Blast_Score=347, Evalue=6e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28984; Mature: 28853

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVFAIMAMIAYLLSLGLIVPGLARNNRAYRHLALAFAAAALLCHAIALYQRIFDVSAGQ
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSLLNMGSSVSLLICLVMSVVASRDRGWFLLPIVYSFALINLGLASFVPGEFITHLEAS
CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
PSLLFHIGLALFSYATLIIAALYAFQVAWMDHLLKNKKLSLRADMPPLMSIERKMFHITL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
VGVVLLTLTLISGSLYMEQLFSSENMHKALLSLLAWCVYIILLWGHYRRGWRGRPVVWCN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LAGAALLTLAYFGSRIILGLAQ
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVFAIMAMIAYLLSLGLIVPGLARNNRAYRHLALAFAAAALLCHAIALYQRIFDVSAGQ
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSLLNMGSSVSLLICLVMSVVASRDRGWFLLPIVYSFALINLGLASFVPGEFITHLEAS
CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
PSLLFHIGLALFSYATLIIAALYAFQVAWMDHLLKNKKLSLRADMPPLMSIERKMFHITL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
VGVVLLTLTLISGSLYMEQLFSSENMHKALLSLLAWCVYIILLWGHYRRGWRGRPVVWCN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
LAGAALLTLAYFGSRIILGLAQ
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]