| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921017
Identifier: 238921017
GI number: 238921017
Start: 3027984
End: 3030641
Strand: Direct
Name: 238921017
Synonym: NT01EI_3147
Alternate gene names: NA
Gene position: 3027984-3030641 (Clockwise)
Preceding gene: 238921016
Following gene: 238921018
Centisome position: 79.43
GC content: 55.57
Gene sequence:
>2658_bases ATGCAACCACAATTACATCAGGAAATCATGCGGCGACTGCTGGCCGACTTTTCCTTTAAAGAACAGGGGGACTGGCTACG GCAGGGCGTCTGCCCGGACTGCCAGAAAAAGGAGCTGTACACCAGCGCCATCAGCCCGTGGGTATTACGCTGCGGTCGCC TGAATAAATGCCATGCCGAACTCCATATCAAAGAGGTGTATCCGGATCTGTTTGAAAGCTGGTCGGACAGACACCCCTCA ACGCCAGAAAACCCTCAGGCCGCCGCCGATGCCTATCTGCGCGAAATGCGCGGCTTCGACCTATCCCTGCTCCGTGATTG TTACCGTCAGGAGAACCACTATAACGCGCGCTTAGATATCGGCTCGGCCACGGTGCGTTTCCCGCTGGCAGACGGCGTAT GGTGGGAGCGGATCATTGACCGCCCGCAGCGCTTCGGCGATCGCAAGGCCAATTTTCACGGTGCTTACAGCGGGCTATGG TGGCAACTGCCGACGCTAAAGCTGGAAGAGCAGCAGGAGATCTGGCTGGTTGAAGGTATTTTTGACGCCATCGCTCTGCA CCACCACGGTATCGCCGCCGTTTCCCTGATGAGCTGCAACAACTATCCGGCGCAGGCGTTAAGCCAACTGGCCGCAATAT TCACGGACAAGAAACGTCTCCTGCTGGTCTGGGCGCTGGATAATGATAAAGCAGGGATGAGCTACACCCGCCGCTGGGTG AAACGCAGCCGCGACGATGGCTGGCCCGCCACCGCCGCACAGACGCCACATTCCCACAACAAGCTGGACTGGAACGATCT GCACCAACGCGATCGGTTACACCCGGAGCTGATTAAAAAATACCGTTACTATGGCTCGCTGCTGATCGCCCCTAATCCGA ACGCCAAAGCCTTGCTGATGTATGAGCGCACCGAGCGCAAGGAGTTTCACTTTGAATTCGACAGCCGCCTGTACTGGTTC AAGCTGGATATTGACCGCTACATGCGCGCCTTTGATAACGTGATGTATAACAGCAAGGAGGATCTGGACGAGGAAGAGGC CAAACATAAAGCCCTGCAGGAATCCGCCGCTGTTGTTGAGATAGCCAACTGCTACCCGACGGCCCTTTACTATCAGGCCA ACGCCATCACCGACGAAAGTTGGTATTACTTCCGCATTAACTTCCCGGACGACACGCCGCCGATAAAAAACACCTTTACC GGCTCCCAACTTTCCAGTGCTTCGGAGTTCAAAAAACGCCTGCTGCATATCGCGCAGGGCGGCATCTTCACAGGTACCAG CCAGCAGTTAGATAAGCTGCTGCTTAAGCAACTTCCCCAAATCAAAACCGTCCAGACCACCGACTTTATTGGTTACAGCA AAGAACATCACACCTACGTATTCAATGATCTGGCCGTGCGCAACGGTCGGCTATACCTGCTTAACGAAGAGGACTTTTTC GACATGGGTAAACTCAACCTAAAAAGCCTGAATCAATCGGTCAATTTAGCACTCAACACGGATCTCAAACAAATGAACCC ACAATGGCCGCAACTGCTCTGGCAGGCGTTTGGCGCTAAAGGTTTCGTTGCGCTGGCGTTTTGGCTCGGCTCACTGTTTG CCGAGCAGATCCGCGATAAGCATAAAAGTTTTCCATTTCTGGAGATCGTCGGCGAGCCGGGCAGCGGCAAAACCACGCTG ATCGAGTTCCTCTGGAAACTACTGGGGCGCCGCGATTATGAGGGCTTCGACCCATCCAAAGCGACGTTGGCCGCCCGTGC GCGCAACTTTGCTCAGGTGGCGAACCTGCCGGTGGTACTGATTGAAGGCGACCGTAATCAGGACGGGGCAAAGCAGCGCG GCTTCGACTGGGAAGAGCTGAAGACCGCTTATAATGGCCGTTCAGTGCGTTCGCGCGGCCTGCGTAACAGCGGTAACGAG ACCTATGAACCACCGTTTCGAGGGGCGATCGTCATCGCACAGAACGCGGATGTCAGCGCTTCTACCCCGATACTGGAACG TATTATCCACCTGTATACCGACCGCAGCGGGCAGAATGCACAGACCAAAGCCGCCGCCGAGCAGCTTGAGCGCCTGCCGG TGGAACAGGTTTCCGGTTTTATGTTGAAAGCGGCGCTGACAGAGCAGGCCGTACTGGAGTGCGTCAACCGCCAGCTCCCG ATTTATGAGCAGCAGCTTCACGCCCACCCCGATATTCGCCATATTCGCATCATTAAAAATCACGCCCAGCTTATGGCGCT GCTCGACGCGCTGGCACTGGTTATTCCGGTCACGGAGGAGCAGCAACAGACAACCAGAGAAATGCTTGTCCAGCTCAGTC TGGAACGCCAGCAGGCCATCAGCGCCGATCATCCTCTGGTACAGGAATTCTGGGATATTTTCGACTTCCTAGACGGAGAC GACGAACCACAGCTTAACCACTCGCGCGACGAACAGCTTATTGCCGTCAACCTCAACCACTTCATTCAACAGGCCACCGA ACGCCGGCAGCAAACCCCGCCCGTCAGCGACTTAAAACGGGTACTGAAAACCAGCCGTACCCACAAGTTTGTTGAAGTCA GAACGGTGAACAGCGCCATCAACGCCGAATTTAACCGCCGTTACCCTGCCGCACCACGCCGCCCGCCGACGGTGAAGTGC TGGGTTTTTCAACGTTAA
Upstream 100 bases:
>100_bases AATAAATACACGTAATAATTTTAAATAAAGCAATCACCATATAAATAAAAAACACATTTTATGTGCCGGGAAGGTATTAC CTGAATGAAAGGTGCAGGCA
Downstream 100 bases:
>100_bases AAGGAGAGAACGATGAATGAGTTTTTAGAGGTACTAGCCCAATCAGAAAACCAACGGCAGAGGCTCCGCGTAACACCTGA AGAGTATCAACATGCCGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Protein; Phage-Related Protein; Primase; DNA Primase-Like Protein; DNAG-Type Primase
Number of amino acids: Translated: 885; Mature: 885
Protein sequence:
>885_residues MQPQLHQEIMRRLLADFSFKEQGDWLRQGVCPDCQKKELYTSAISPWVLRCGRLNKCHAELHIKEVYPDLFESWSDRHPS TPENPQAAADAYLREMRGFDLSLLRDCYRQENHYNARLDIGSATVRFPLADGVWWERIIDRPQRFGDRKANFHGAYSGLW WQLPTLKLEEQQEIWLVEGIFDAIALHHHGIAAVSLMSCNNYPAQALSQLAAIFTDKKRLLLVWALDNDKAGMSYTRRWV KRSRDDGWPATAAQTPHSHNKLDWNDLHQRDRLHPELIKKYRYYGSLLIAPNPNAKALLMYERTERKEFHFEFDSRLYWF KLDIDRYMRAFDNVMYNSKEDLDEEEAKHKALQESAAVVEIANCYPTALYYQANAITDESWYYFRINFPDDTPPIKNTFT GSQLSSASEFKKRLLHIAQGGIFTGTSQQLDKLLLKQLPQIKTVQTTDFIGYSKEHHTYVFNDLAVRNGRLYLLNEEDFF DMGKLNLKSLNQSVNLALNTDLKQMNPQWPQLLWQAFGAKGFVALAFWLGSLFAEQIRDKHKSFPFLEIVGEPGSGKTTL IEFLWKLLGRRDYEGFDPSKATLAARARNFAQVANLPVVLIEGDRNQDGAKQRGFDWEELKTAYNGRSVRSRGLRNSGNE TYEPPFRGAIVIAQNADVSASTPILERIIHLYTDRSGQNAQTKAAAEQLERLPVEQVSGFMLKAALTEQAVLECVNRQLP IYEQQLHAHPDIRHIRIIKNHAQLMALLDALALVIPVTEEQQQTTREMLVQLSLERQQAISADHPLVQEFWDIFDFLDGD DEPQLNHSRDEQLIAVNLNHFIQQATERRQQTPPVSDLKRVLKTSRTHKFVEVRTVNSAINAEFNRRYPAAPRRPPTVKC WVFQR
Sequences:
>Translated_885_residues MQPQLHQEIMRRLLADFSFKEQGDWLRQGVCPDCQKKELYTSAISPWVLRCGRLNKCHAELHIKEVYPDLFESWSDRHPS TPENPQAAADAYLREMRGFDLSLLRDCYRQENHYNARLDIGSATVRFPLADGVWWERIIDRPQRFGDRKANFHGAYSGLW WQLPTLKLEEQQEIWLVEGIFDAIALHHHGIAAVSLMSCNNYPAQALSQLAAIFTDKKRLLLVWALDNDKAGMSYTRRWV KRSRDDGWPATAAQTPHSHNKLDWNDLHQRDRLHPELIKKYRYYGSLLIAPNPNAKALLMYERTERKEFHFEFDSRLYWF KLDIDRYMRAFDNVMYNSKEDLDEEEAKHKALQESAAVVEIANCYPTALYYQANAITDESWYYFRINFPDDTPPIKNTFT GSQLSSASEFKKRLLHIAQGGIFTGTSQQLDKLLLKQLPQIKTVQTTDFIGYSKEHHTYVFNDLAVRNGRLYLLNEEDFF DMGKLNLKSLNQSVNLALNTDLKQMNPQWPQLLWQAFGAKGFVALAFWLGSLFAEQIRDKHKSFPFLEIVGEPGSGKTTL IEFLWKLLGRRDYEGFDPSKATLAARARNFAQVANLPVVLIEGDRNQDGAKQRGFDWEELKTAYNGRSVRSRGLRNSGNE TYEPPFRGAIVIAQNADVSASTPILERIIHLYTDRSGQNAQTKAAAEQLERLPVEQVSGFMLKAALTEQAVLECVNRQLP IYEQQLHAHPDIRHIRIIKNHAQLMALLDALALVIPVTEEQQQTTREMLVQLSLERQQAISADHPLVQEFWDIFDFLDGD DEPQLNHSRDEQLIAVNLNHFIQQATERRQQTPPVSDLKRVLKTSRTHKFVEVRTVNSAINAEFNRRYPAAPRRPPTVKC WVFQR >Mature_885_residues MQPQLHQEIMRRLLADFSFKEQGDWLRQGVCPDCQKKELYTSAISPWVLRCGRLNKCHAELHIKEVYPDLFESWSDRHPS TPENPQAAADAYLREMRGFDLSLLRDCYRQENHYNARLDIGSATVRFPLADGVWWERIIDRPQRFGDRKANFHGAYSGLW WQLPTLKLEEQQEIWLVEGIFDAIALHHHGIAAVSLMSCNNYPAQALSQLAAIFTDKKRLLLVWALDNDKAGMSYTRRWV KRSRDDGWPATAAQTPHSHNKLDWNDLHQRDRLHPELIKKYRYYGSLLIAPNPNAKALLMYERTERKEFHFEFDSRLYWF KLDIDRYMRAFDNVMYNSKEDLDEEEAKHKALQESAAVVEIANCYPTALYYQANAITDESWYYFRINFPDDTPPIKNTFT GSQLSSASEFKKRLLHIAQGGIFTGTSQQLDKLLLKQLPQIKTVQTTDFIGYSKEHHTYVFNDLAVRNGRLYLLNEEDFF DMGKLNLKSLNQSVNLALNTDLKQMNPQWPQLLWQAFGAKGFVALAFWLGSLFAEQIRDKHKSFPFLEIVGEPGSGKTTL IEFLWKLLGRRDYEGFDPSKATLAARARNFAQVANLPVVLIEGDRNQDGAKQRGFDWEELKTAYNGRSVRSRGLRNSGNE TYEPPFRGAIVIAQNADVSASTPILERIIHLYTDRSGQNAQTKAAAEQLERLPVEQVSGFMLKAALTEQAVLECVNRQLP IYEQQLHAHPDIRHIRIIKNHAQLMALLDALALVIPVTEEQQQTTREMLVQLSLERQQAISADHPLVQEFWDIFDFLDGD DEPQLNHSRDEQLIAVNLNHFIQQATERRQQTPPVSDLKRVLKTSRTHKFVEVRTVNSAINAEFNRRYPAAPRRPPTVKC WVFQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102396; Mature: 102396
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPQLHQEIMRRLLADFSFKEQGDWLRQGVCPDCQKKELYTSAISPWVLRCGRLNKCHAE CCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHH LHIKEVYPDLFESWSDRHPSTPENPQAAADAYLREMRGFDLSLLRDCYRQENHYNARLDI HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE GSATVRFPLADGVWWERIIDRPQRFGDRKANFHGAYSGLWWQLPTLKLEEQQEIWLVEGI CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEECCCCCEEHHHHH FDAIALHHHGIAAVSLMSCNNYPAQALSQLAAIFTDKKRLLLVWALDNDKAGMSYTRRWV HHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH KRSRDDGWPATAAQTPHSHNKLDWNDLHQRDRLHPELIKKYRYYGSLLIAPNPNAKALLM HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCCCEEEE YERTERKEFHFEFDSRLYWFKLDIDRYMRAFDNVMYNSKEDLDEEEAKHKALQESAAVVE EECCCCCEEEEEECCEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEE IANCYPTALYYQANAITDESWYYFRINFPDDTPPIKNTFTGSQLSSASEFKKRLLHIAQG ECCCCCEEEEEEECCEECCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCC GIFTGTSQQLDKLLLKQLPQIKTVQTTDFIGYSKEHHTYVFNDLAVRNGRLYLLNEEDFF CEECCCHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCEEEEEEEEEECCEEEEECCCCCC DMGKLNLKSLNQSVNLALNTDLKQMNPQWPQLLWQAFGAKGFVALAFWLGSLFAEQIRDK CCCCCCHHHCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH HKSFPFLEIVGEPGSGKTTLIEFLWKLLGRRDYEGFDPSKATLAARARNFAQVANLPVVL HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE IEGDRNQDGAKQRGFDWEELKTAYNGRSVRSRGLRNSGNETYEPPFRGAIVIAQNADVSA EECCCCCCCHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC STPILERIIHLYTDRSGQNAQTKAAAEQLERLPVEQVSGFMLKAALTEQAVLECVNRQLP CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC IYEQQLHAHPDIRHIRIIKNHAQLMALLDALALVIPVTEEQQQTTREMLVQLSLERQQAI CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH SADHPLVQEFWDIFDFLDGDDEPQLNHSRDEQLIAVNLNHFIQQATERRQQTPPVSDLKR CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHH VLKTSRTHKFVEVRTVNSAINAEFNRRYPAAPRRPPTVKCWVFQR HHHHCCCCEEEEEEEHHHHHCCHHCCCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MQPQLHQEIMRRLLADFSFKEQGDWLRQGVCPDCQKKELYTSAISPWVLRCGRLNKCHAE CCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHHHHCCCCCCHHHH LHIKEVYPDLFESWSDRHPSTPENPQAAADAYLREMRGFDLSLLRDCYRQENHYNARLDI HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEE GSATVRFPLADGVWWERIIDRPQRFGDRKANFHGAYSGLWWQLPTLKLEEQQEIWLVEGI CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEECCCCCEEHHHHH FDAIALHHHGIAAVSLMSCNNYPAQALSQLAAIFTDKKRLLLVWALDNDKAGMSYTRRWV HHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH KRSRDDGWPATAAQTPHSHNKLDWNDLHQRDRLHPELIKKYRYYGSLLIAPNPNAKALLM HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCCCEEEE YERTERKEFHFEFDSRLYWFKLDIDRYMRAFDNVMYNSKEDLDEEEAKHKALQESAAVVE EECCCCCEEEEEECCEEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEE IANCYPTALYYQANAITDESWYYFRINFPDDTPPIKNTFTGSQLSSASEFKKRLLHIAQG ECCCCCEEEEEEECCEECCCEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCC GIFTGTSQQLDKLLLKQLPQIKTVQTTDFIGYSKEHHTYVFNDLAVRNGRLYLLNEEDFF CEECCCHHHHHHHHHHHCCCCEEEEEHHCCCCCCCCCEEEEEEEEEECCEEEEECCCCCC DMGKLNLKSLNQSVNLALNTDLKQMNPQWPQLLWQAFGAKGFVALAFWLGSLFAEQIRDK CCCCCCHHHCCCCEEEEEECCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH HKSFPFLEIVGEPGSGKTTLIEFLWKLLGRRDYEGFDPSKATLAARARNFAQVANLPVVL HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE IEGDRNQDGAKQRGFDWEELKTAYNGRSVRSRGLRNSGNETYEPPFRGAIVIAQNADVSA EECCCCCCCHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC STPILERIIHLYTDRSGQNAQTKAAAEQLERLPVEQVSGFMLKAALTEQAVLECVNRQLP CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC IYEQQLHAHPDIRHIRIIKNHAQLMALLDALALVIPVTEEQQQTTREMLVQLSLERQQAI CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH SADHPLVQEFWDIFDFLDGDDEPQLNHSRDEQLIAVNLNHFIQQATERRQQTPPVSDLKR CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHH VLKTSRTHKFVEVRTVNSAINAEFNRRYPAAPRRPPTVKCWVFQR HHHHCCCCEEEEEEEHHHHHCCHHCCCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA