Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921002
Identifier: 238921002
GI number: 238921002
Start: 3014809
End: 3015720
Strand: Direct
Name: 238921002
Synonym: NT01EI_3132
Alternate gene names: NA
Gene position: 3014809-3015720 (Clockwise)
Preceding gene: 238921001
Following gene: 238921003
Centisome position: 79.08
GC content: 56.91
Gene sequence:
>912_bases GTGAGCGCACTGACCGATTTAAGCCAGCTCCCCGTCCCCGATACGGTGGAAACCCTCGACTTTGAAACGTTGTTCACCGC ACGCAAACAGCGCTTTATCAGCCTGTACCCTGTCGAACAGAGGGCAGAAGTAGCGCGTACCCTGAATTATGAATCAGAAC CTATCGTTAAGCTGTTGCAGGAAAATGCGTATCTGGAGATGGCGCTGCGGGTACGGATTAATGAAGCCGCCGTCGCCAAT ATGCTGGCCCACGCCTCCAGGCGCGATCTGGACAATCTGACGGCTAACTTTAAAGTCTTCCGTCTGTTAATCTCCCCCGG AGACAGCACGGCGGTCCCCCCGGTTGAGCCGGTTTATGAATCTGACGACGCCCTGCGTATACGCGCACAGCAGGCGTTTG AAGGTCTATCGGTCGCAGGACCGACCGCTGCTTATGAATATCACGCCCACAGCGCCGATGGGCGCATTGCTGACGTTTCC GCCATCAGTCCGCATCCCTGTTACGTCACCGTGTCGGTACTCTCCCGCGAAGGTAACGGGCAGGCCAGCGCGGAACTGCT GGCGATAGTTGATGACGCCCTAAACGATATTGATATTCGTCCGGTCGGCGATCGTCCAACCATCCAGTCTGCCGAAATCA TCCCGTACCAGATCAATGCACTGTTGTACTACTACCCCGGCCCGGAGCAGGAACCCATCCGGCAGGCTGCCGAACAGCGG CTTAAAAACTACATCAACGAGCAACACCGCATCGGGCGTGATATCCGCCGCAGCGCGATTTATGCCGCGCTGCATGTCAC CGGTGTTCAGCGCGTCGAGCTGATTGCGCCTGATGCTGACGTCATTATCAGCAGAACGCAGGCCAGCTTCTGCACCGAAT GGCAGATCGCTATCGGAGGCAACGATGAATAG
Upstream 100 bases:
>100_bases CCGCCGAGGGTTCTGACCTCAGCGTCACCGTTGACGCCGAACGCACTGATATCCCTGGCCAGCCGTGGAAGCTCTCCATC CCGCTCGACAGGAGAAACGC
Downstream 100 bases:
>100_bases CCGTTCCTTGCTCCCCGATAACGCCAGCCCGCTGGAGCATAATCTGGCACAAACCGGCAGCATGATTGAACAGATCCCCG TTCCGCTGCGCAGCCTGTGG
Product: baseplate assembly protein J (GpJ)
Products: NA
Alternate protein names: Baseplate Assembly Protein J; Baseplate J-Like Protein; Phage Baseplate Assembly Protein; Phage-Related Baseplate Assembly Protein; Bacteriophage Baseplate Assembly Protein; Phage Baseplate Assembly Protein J; Pyocin R2_PP Baseplate/Tail Fiber Protein; Phage Protein Gp; Bacteriophage Baseplate Assembly Protein J; Phage Baseplate Protein; Phage Baseplate J-Like Protein; Prophage LambdaW5 Baseplate Assembly Protein J; Baseplate Assembly-Like Protein; GPJ Of Phage P2-Like; Phage P2 Baseplate Assembly Protein; Phage Tail-Like Protein; Bacteriophage Protein; Phage P2 Baseplate Assembly GpJ-Like Protein; Prophage Baseplate Assembly Protein; Bacteriophage Tail Fiber Protein; Bacteriophage P2 Baseplate Assembly Protein GPJ; Baseplate Assembly Protein GpJ; Baseplate Assembly Protein J Prophage; Baseplate Assembly Protein; Bacteriophage Baseplate Protein; Baseplate Protein Putative Phage Associated Protein; Prophage LambdaW1 Baseplate Assembly Protein J; Phage Tail Protein; Phage Baseplate-Like Protein
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MSALTDLSQLPVPDTVETLDFETLFTARKQRFISLYPVEQRAEVARTLNYESEPIVKLLQENAYLEMALRVRINEAAVAN MLAHASRRDLDNLTANFKVFRLLISPGDSTAVPPVEPVYESDDALRIRAQQAFEGLSVAGPTAAYEYHAHSADGRIADVS AISPHPCYVTVSVLSREGNGQASAELLAIVDDALNDIDIRPVGDRPTIQSAEIIPYQINALLYYYPGPEQEPIRQAAEQR LKNYINEQHRIGRDIRRSAIYAALHVTGVQRVELIAPDADVIISRTQASFCTEWQIAIGGNDE
Sequences:
>Translated_303_residues MSALTDLSQLPVPDTVETLDFETLFTARKQRFISLYPVEQRAEVARTLNYESEPIVKLLQENAYLEMALRVRINEAAVAN MLAHASRRDLDNLTANFKVFRLLISPGDSTAVPPVEPVYESDDALRIRAQQAFEGLSVAGPTAAYEYHAHSADGRIADVS AISPHPCYVTVSVLSREGNGQASAELLAIVDDALNDIDIRPVGDRPTIQSAEIIPYQINALLYYYPGPEQEPIRQAAEQR LKNYINEQHRIGRDIRRSAIYAALHVTGVQRVELIAPDADVIISRTQASFCTEWQIAIGGNDE >Mature_302_residues SALTDLSQLPVPDTVETLDFETLFTARKQRFISLYPVEQRAEVARTLNYESEPIVKLLQENAYLEMALRVRINEAAVANM LAHASRRDLDNLTANFKVFRLLISPGDSTAVPPVEPVYESDDALRIRAQQAFEGLSVAGPTAAYEYHAHSADGRIADVSA ISPHPCYVTVSVLSREGNGQASAELLAIVDDALNDIDIRPVGDRPTIQSAEIIPYQINALLYYYPGPEQEPIRQAAEQRL KNYINEQHRIGRDIRRSAIYAALHVTGVQRVELIAPDADVIISRTQASFCTEWQIAIGGNDE
Specific function: Unknown
COG id: COG3948
COG function: function code R; Phage-related baseplate assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33615; Mature: 33484
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALTDLSQLPVPDTVETLDFETLFTARKQRFISLYPVEQRAEVARTLNYESEPIVKLLQ CCCHHHHHHCCCCCCHHHCCHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCCCHHHHHHH ENAYLEMALRVRINEAAVANMLAHASRRDLDNLTANFKVFRLLISPGDSTAVPPVEPVYE CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCC SDDALRIRAQQAFEGLSVAGPTAAYEYHAHSADGRIADVSAISPHPCYVTVSVLSREGNG CCCCEEEEHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCCCC QASAELLAIVDDALNDIDIRPVGDRPTIQSAEIIPYQINALLYYYPGPEQEPIRQAAEQR CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH LKNYINEQHRIGRDIRRSAIYAALHVTGVQRVELIAPDADVIISRTQASFCTEWQIAIGG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHEEEEECCCCCCEEEEEEECC NDE CCC >Mature Secondary Structure SALTDLSQLPVPDTVETLDFETLFTARKQRFISLYPVEQRAEVARTLNYESEPIVKLLQ CCHHHHHHCCCCCCHHHCCHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCCCHHHHHHH ENAYLEMALRVRINEAAVANMLAHASRRDLDNLTANFKVFRLLISPGDSTAVPPVEPVYE CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCC SDDALRIRAQQAFEGLSVAGPTAAYEYHAHSADGRIADVSAISPHPCYVTVSVLSREGNG CCCCEEEEHHHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCCCC QASAELLAIVDDALNDIDIRPVGDRPTIQSAEIIPYQINALLYYYPGPEQEPIRQAAEQR CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH LKNYINEQHRIGRDIRRSAIYAALHVTGVQRVELIAPDADVIISRTQASFCTEWQIAIGG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHEEEEECCCCCCEEEEEEECC NDE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA