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The map label for this gene is intA [H]

Identifier: 238920941

GI number: 238920941

Start: 2963375

End: 2963602

Strand: Direct

Name: intA [H]

Synonym: NT01EI_3071

Alternate gene names: 238920941

Gene position: 2963375-2963602 (Clockwise)

Preceding gene: 238920940

Following gene: 238920950

Centisome position: 77.73

GC content: 46.49

Gene sequence:

>228_bases
GTGCAGGATCTTAAAGCTAGAACGATTGTCGAAGCACTGGAGCCAATAAAAGCGCGCGGTGCTCTGGAGACTGTTAGACG
CTTAGTACAGCGTATCAATGAAATAATGATCTATGCGGTCAACACTGGGCTAATTGATGCTAACCCATCATCCGGCGTAA
GAATGGCTTTTGAAAAACCCAAAAAGCAAAGCATGCCAACCCTGCGGCAGAAGAATTGCCTAAGCTGA

Upstream 100 bases:

>100_bases
CTGGTTCCAGATTAAAAGCAGAACCGTCACCGAGGATTATGGGAAAGACATTTGGCGCTCACTAGATAAAGACGTGTTCC
CTGCGATCGGAGCAATACCA

Downstream 100 bases:

>100_bases
TGCGTTCGCTAGTCATGTCAAATCTGTCTGTTCCGACTCGCTGTCTTATTGAGTGGCAACTCCTGACGCTCGTTCGCCCT
TCAGAGGCTTCAGGCGCACG

Product: site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MQDLKARTIVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPSSGVRMAFEKPKKQSMPTLRQKNCLS

Sequences:

>Translated_75_residues
MQDLKARTIVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPSSGVRMAFEKPKKQSMPTLRQKNCLS
>Mature_75_residues
MQDLKARTIVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPSSGVRMAFEKPKKQSMPTLRQKNCLS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=67, Percent_Identity=65.6716417910448, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 8440; Mature: 8440

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLKARTIVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPSSGVRMAFEKP
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEHHCCCCEEECCCCCCCCHHHCCC
KKQSMPTLRQKNCLS
CCCCCCCHHHCCCCC
>Mature Secondary Structure
MQDLKARTIVEALEPIKARGALETVRRLVQRINEIMIYAVNTGLIDANPSSGVRMAFEKP
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEHHCCCCEEECCCCCCCCHHHCCC
KKQSMPTLRQKNCLS
CCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]