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The map label for this gene is ybeY [C]

Identifier: 238920800

GI number: 238920800

Start: 2815547

End: 2816020

Strand: Direct

Name: ybeY [C]

Synonym: NT01EI_2926

Alternate gene names: 238920800

Gene position: 2815547-2816020 (Clockwise)

Preceding gene: 238920799

Following gene: 238920801

Centisome position: 73.85

GC content: 57.59

Gene sequence:

>474_bases
ATGAGCAATATTATTCTCGACCTGCAGCTGGCCTGCGCAGATCTTCAGGGACTGCCTGCTGAAGGCGACTTTCTGCGCTG
GCTGGAAGCCGTCCTGCCGCGTTTTCGCGATGAAGCCGAGGTGACCATTCGCCTGGTGGATGAGGCTGAAAGCCACGAGC
TTAACCTCACCTACCGCGGCAAGGATCGCCCGACCAACGTGCTCTCTTTCCCGTTTGAAGCCCCGCCGGGCATCGAGCTG
CCGCTGCTCGGCGACATGGTGATCTGTCGCCAGGTGGTAGAGCGCGAGGCGCAGGAGCAGAACATCTCGCAACTCTCACA
TTGGGCGCATATGGTTGTGCATGGCTCGCTTCATCTGCTAGGGTATGACCACATCAGCGATGAAGAAGCTGAAGAAATGG
AATCTCTGGAAGCCGAAATCATGCAGGTGTTGGGTTACCCCGACCCCTATGCGGCAGAAAAAGAGTCCGACTGA

Upstream 100 bases:

>100_bases
TGGCCTATGAAGCGTGGGAAGCGGCAGAGCAACAACGTAAAGAGGCCCTGGCCGCCGAGCGCAAGCACGAGGCACAGGCC
GCCCAGACACAGGAACAACC

Downstream 100 bases:

>100_bases
ACGACCCCCCGGGGTCACGTTTGCGGTGGCCGCTGCACAGCGCCACCGTTAAGATTGACCAGACTAAGAGTAACCATACA
TATACGCTATGAGCGACGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSNIILDLQLACADLQGLPAEGDFLRWLEAVLPRFRDEAEVTIRLVDEAESHELNLTYRGKDRPTNVLSFPFEAPPGIEL
PLLGDMVICRQVVEREAQEQNISQLSHWAHMVVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAEKESD

Sequences:

>Translated_157_residues
MSNIILDLQLACADLQGLPAEGDFLRWLEAVLPRFRDEAEVTIRLVDEAESHELNLTYRGKDRPTNVLSFPFEAPPGIEL
PLLGDMVICRQVVEREAQEQNISQLSHWAHMVVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAEKESD
>Mature_156_residues
SNIILDLQLACADLQGLPAEGDFLRWLEAVLPRFRDEAEVTIRLVDEAESHELNLTYRGKDRPTNVLSFPFEAPPGIELP
LLGDMVICRQVVEREAQEQNISQLSHWAHMVVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAEKESD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=155, Percent_Identity=74.1935483870968, Blast_Score=226, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_EDWI9 (C5BGB7)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002934315.1
- ProteinModelPortal:   C5BGB7
- GeneID:   7960204
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2926
- OMA:   FTDPYKE
- ProtClustDB:   CLSK2503931
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17768; Mature: 17637

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIILDLQLACADLQGLPAEGDFLRWLEAVLPRFRDEAEVTIRLVDEAESHELNLTYRG
CCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECC
KDRPTNVLSFPFEAPPGIELPLLGDMVICRQVVEREAQEQNISQLSHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
GYDHISDEEAEEMESLEAEIMQVLGYPDPYAAEKESD
ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SNIILDLQLACADLQGLPAEGDFLRWLEAVLPRFRDEAEVTIRLVDEAESHELNLTYRG
CCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECC
KDRPTNVLSFPFEAPPGIELPLLGDMVICRQVVEREAQEQNISQLSHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
GYDHISDEEAEEMESLEAEIMQVLGYPDPYAAEKESD
ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA