| Definition | Eubacterium eligens ATCC 27750 chromosome, complete genome. |
|---|---|
| Accession | NC_012778 |
| Length | 2,144,190 |
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The map label for this gene is nrdD [H]
Identifier: 238917493
GI number: 238917493
Start: 1623402
End: 1625582
Strand: Reverse
Name: nrdD [H]
Synonym: EUBELI_01571
Alternate gene names: 238917493
Gene position: 1625582-1623402 (Counterclockwise)
Preceding gene: 238917494
Following gene: 238917491
Centisome position: 75.81
GC content: 38.42
Gene sequence:
>2181_bases ATGAAAATTATTAAAAGAAGTGGGTCGGAGGTTACATTTGATATAAGTAAAATCATGGCCGCCGTATCAAAAGCTAATAT GGAAGTTGTCCATAGCGAAAGACTGTCAGAAGAACAGATTGAAACAATATCTAATAATGTTGAGAGCATCTGTAAAGAAA TGAACCGTTCATTAAGTGTTGAGGAAATTCAGGATCTTGTAGAAAACCAGATTATGAATTTAAGAGCATTTGCAGTTGCA AGAAAGTATATTACATATCGTTATAAGAGAGCGCTTGTGCGTAAGTCTAATTCAACAGATGAGCAGATATTAAGCCTTCT TGAGTGTAATAATGAGGAAGTAAAGCAGGAAAATTCTAATAAGAATCCTACTGTTAACAGTGTGCAGAGAGATTATATGG CAGGAGAGGTAAGTAAGGACATTACTAAAAGACTTCTTCTCCCAGCAGATATTGTTGATGCACATGAGCAGGGACTTATA CATTTCCATGATGCAGATTATTTTGCACAGCATATGCATAACTGCTGTCTTGTCAATCTTGAGGATATGTTACAGAATGG AACTGTAATAAGCGAGACTATGATTGAGAAGCCACACAGCTTTTCTACAGCATGTAATATTGCAACTCAGGCAATTGCAC AGATTGCAAGTTCACAGTATGGCGGACAGAGTATATCACTTGCACATCTTGCTCCGTTTGTTCAGGTGAGCCGTGAGAAA TTTATTGGTCAGGTAAGGGATGAATTTGAGAGAACAGGAATAGAAGCATCAGAAGAGAAGATTAAAGAGGTCGCTGAACT TCGTGTAAGAGATGAGATTAAGCGTGGCGTCCAGATGATTCAGTATCAGGTTATCACACTTATGACAACTAATGGTCAGG CTCCATTCGTTACTGTATTTATGTACCTTGATGAAGTTCCAGAAGGAAGAACAAGAGAAGATCTGGCTCTTGTTACAGAG GAAGTTCTTAAGCAGAGAATGCAGGGTGTTAAGAATGAGAAGGGTGTATGGATTACACCAGCTTTCCCTAAGCTTATATA TGTTCTTGAGGAGGACAATATAAGAGAAGGCAGCAAGTATTGGGAACTTACAAAGCTGGCAGCAGAATGTACAGCTAAGA GAATGGTTCCTGATTATATATCTGAAAAGAAGATGAAGGAATTAAAGGTTGATGCCAATGGCAATGGACAGTGTTTCCCA TGTATGGGATGCAGAAGCTTCCTTACACCATATATTGATCCGGAAACAGGAAAGCCAAAGTATTATGGCAGATTTAATCA GGGAGTTGTAACTCTTAACCTTGTTGATGTTGCCTGCTCATCAGGAAAGGATATGGATAAATTCTGGAGTATCCTTGATG AGAGACTGGAACTCTGTAAGAGAGCACTTATGTGTAGACATTACAGACTTAAAGGAACACCTTCAGATGTTGCTCCAATT CTCTGGCAGAATGGTGCACTTGCAAGACTTAAGAAGGGTGAAACAATTGATAAGCTTCTTTATGGCGGATATTCAACAAT TTCTCTTGGATATGCAGGACTTTGCGAGTGTACATATTACATGAAGGGTGTTACACATACTAAGCCAGATGGTACAGAAT TTGCACTTGAGGTAATGAAACATCTTAACGATATATGTAAGAAATGGGCGGCAGAGACTAATATTGATTTCTCACTTTAT GGTACACCACTTGAATCAACAACTTACAAGTTTGCTAAGTGTTTACAGAAGAGATTCGGTAAGATTGCCGGTGTAACAGA TAAGAACTATATAACTAACAGTTATCATGTTCATGTAACAGAGAATATCAATGCATTTGATAAACTGAAATTCGAATCAC AGTTCCAGGAATTATCCCCAGGTGGTGCTATCAGCTATGTTGAGGTTCCTGATATGCAGAATAATATTCCTGCAGTACTT AAGGTTATGCAGTACATTTATGATAATATTATGTATGCGGAGCTTAATACTAAGAGTGATTACTGTCAGGAATGTGGTTA CACAGGACAGATTCAGATTATAACTGATGATGACGGAAAGCTTATATGGGAATGCCCTAACTGCGGAAACCGTAATCAGG ATAAGATGAATGTTGCAAGACGTACTTGTGGATATATTGGGACACAGTTCTGGAATCAGGGAAGAACTCAGGAGATTAAA GAGAGAGTGCTTCATCTGTAA
Upstream 100 bases:
>100_bases ACTGGGTTCCCAGCAGATTTTTTTCATGTGTATGATTTCACATGGTGTTATTAATGATTATTCATGGGGACATGAAAGTG TTTATGTGAGGGTTTGAAGT
Downstream 100 bases:
>100_bases GATTAAATATAATATGGCAGGACATGGATTAATATCGTGTCCTGCCATTATTTTAGTATTCGGAAAAATATTCATGATTG GTCATGCCGTACAAAGCACC
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 726; Mature: 726
Protein sequence:
>726_residues MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVESICKEMNRSLSVEEIQDLVENQIMNLRAFAVA RKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQENSNKNPTVNSVQRDYMAGEVSKDITKRLLLPADIVDAHEQGLI HFHDADYFAQHMHNCCLVNLEDMLQNGTVISETMIEKPHSFSTACNIATQAIAQIASSQYGGQSISLAHLAPFVQVSREK FIGQVRDEFERTGIEASEEKIKEVAELRVRDEIKRGVQMIQYQVITLMTTNGQAPFVTVFMYLDEVPEGRTREDLALVTE EVLKQRMQGVKNEKGVWITPAFPKLIYVLEEDNIREGSKYWELTKLAAECTAKRMVPDYISEKKMKELKVDANGNGQCFP CMGCRSFLTPYIDPETGKPKYYGRFNQGVVTLNLVDVACSSGKDMDKFWSILDERLELCKRALMCRHYRLKGTPSDVAPI LWQNGALARLKKGETIDKLLYGGYSTISLGYAGLCECTYYMKGVTHTKPDGTEFALEVMKHLNDICKKWAAETNIDFSLY GTPLESTTYKFAKCLQKRFGKIAGVTDKNYITNSYHVHVTENINAFDKLKFESQFQELSPGGAISYVEVPDMQNNIPAVL KVMQYIYDNIMYAELNTKSDYCQECGYTGQIQIITDDDGKLIWECPNCGNRNQDKMNVARRTCGYIGTQFWNQGRTQEIK ERVLHL
Sequences:
>Translated_726_residues MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVESICKEMNRSLSVEEIQDLVENQIMNLRAFAVA RKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQENSNKNPTVNSVQRDYMAGEVSKDITKRLLLPADIVDAHEQGLI HFHDADYFAQHMHNCCLVNLEDMLQNGTVISETMIEKPHSFSTACNIATQAIAQIASSQYGGQSISLAHLAPFVQVSREK FIGQVRDEFERTGIEASEEKIKEVAELRVRDEIKRGVQMIQYQVITLMTTNGQAPFVTVFMYLDEVPEGRTREDLALVTE EVLKQRMQGVKNEKGVWITPAFPKLIYVLEEDNIREGSKYWELTKLAAECTAKRMVPDYISEKKMKELKVDANGNGQCFP CMGCRSFLTPYIDPETGKPKYYGRFNQGVVTLNLVDVACSSGKDMDKFWSILDERLELCKRALMCRHYRLKGTPSDVAPI LWQNGALARLKKGETIDKLLYGGYSTISLGYAGLCECTYYMKGVTHTKPDGTEFALEVMKHLNDICKKWAAETNIDFSLY GTPLESTTYKFAKCLQKRFGKIAGVTDKNYITNSYHVHVTENINAFDKLKFESQFQELSPGGAISYVEVPDMQNNIPAVL KVMQYIYDNIMYAELNTKSDYCQECGYTGQIQIITDDDGKLIWECPNCGNRNQDKMNVARRTCGYIGTQFWNQGRTQEIK ERVLHL >Mature_726_residues MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVESICKEMNRSLSVEEIQDLVENQIMNLRAFAVA RKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQENSNKNPTVNSVQRDYMAGEVSKDITKRLLLPADIVDAHEQGLI HFHDADYFAQHMHNCCLVNLEDMLQNGTVISETMIEKPHSFSTACNIATQAIAQIASSQYGGQSISLAHLAPFVQVSREK FIGQVRDEFERTGIEASEEKIKEVAELRVRDEIKRGVQMIQYQVITLMTTNGQAPFVTVFMYLDEVPEGRTREDLALVTE EVLKQRMQGVKNEKGVWITPAFPKLIYVLEEDNIREGSKYWELTKLAAECTAKRMVPDYISEKKMKELKVDANGNGQCFP CMGCRSFLTPYIDPETGKPKYYGRFNQGVVTLNLVDVACSSGKDMDKFWSILDERLELCKRALMCRHYRLKGTPSDVAPI LWQNGALARLKKGETIDKLLYGGYSTISLGYAGLCECTYYMKGVTHTKPDGTEFALEVMKHLNDICKKWAAETNIDFSLY GTPLESTTYKFAKCLQKRFGKIAGVTDKNYITNSYHVHVTENINAFDKLKFESQFQELSPGGAISYVEVPDMQNNIPAVL KVMQYIYDNIMYAELNTKSDYCQECGYTGQIQIITDDDGKLIWECPNCGNRNQDKMNVARRTCGYIGTQFWNQGRTQEIK ERVLHL
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=737, Percent_Identity=35.9565807327001, Blast_Score=423, Evalue=1e-119,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 82648; Mature: 82648
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVESICKEMNRSLSV CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH EEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQENSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCC KNPTVNSVQRDYMAGEVSKDITKRLLLPADIVDAHEQGLIHFHDADYFAQHMHNCCLVNL CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECHHHHHHHHCCEEEEEH EDMLQNGTVISETMIEKPHSFSTACNIATQAIAQIASSQYGGQSISLAHLAPFVQVSREK HHHHHCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH FIGQVRDEFERTGIEASEEKIKEVAELRVRDEIKRGVQMIQYQVITLMTTNGQAPFVTVF HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHH MYLDEVPEGRTREDLALVTEEVLKQRMQGVKNEKGVWITPAFPKLIYVLEEDNIREGSKY HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHEEEEECCCCCCCCHHH WELTKLAAECTAKRMVPDYISEKKMKELKVDANGNGQCFPCMGCRSFLTPYIDPETGKPK HHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCEEECCCHHHHCCCCCCCCCCCCC YYGRFNQGVVTLNLVDVACSSGKDMDKFWSILDERLELCKRALMCRHYRLKGTPSDVAPI CCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LWQNGALARLKKGETIDKLLYGGYSTISLGYAGLCECTYYMKGVTHTKPDGTEFALEVMK HCCCCCHHHHCCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH HLNDICKKWAAETNIDFSLYGTPLESTTYKFAKCLQKRFGKIAGVTDKNYITNSYHVHVT HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEE ENINAFDKLKFESQFQELSPGGAISYVEVPDMQNNIPAVLKVMQYIYDNIMYAELNTKSD CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCEEEEEECCCHH YCQECGYTGQIQIITDDDGKLIWECPNCGNRNQDKMNVARRTCGYIGTQFWNQGRTQEIK HHHHCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH ERVLHL HHHCCC >Mature Secondary Structure MKIIKRSGSEVTFDISKIMAAVSKANMEVVHSERLSEEQIETISNNVESICKEMNRSLSV CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH EEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQENSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCC KNPTVNSVQRDYMAGEVSKDITKRLLLPADIVDAHEQGLIHFHDADYFAQHMHNCCLVNL CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECHHHHHHHHCCEEEEEH EDMLQNGTVISETMIEKPHSFSTACNIATQAIAQIASSQYGGQSISLAHLAPFVQVSREK HHHHHCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH FIGQVRDEFERTGIEASEEKIKEVAELRVRDEIKRGVQMIQYQVITLMTTNGQAPFVTVF HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHH MYLDEVPEGRTREDLALVTEEVLKQRMQGVKNEKGVWITPAFPKLIYVLEEDNIREGSKY HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHEEEEECCCCCCCCHHH WELTKLAAECTAKRMVPDYISEKKMKELKVDANGNGQCFPCMGCRSFLTPYIDPETGKPK HHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCEEECCCHHHHCCCCCCCCCCCCC YYGRFNQGVVTLNLVDVACSSGKDMDKFWSILDERLELCKRALMCRHYRLKGTPSDVAPI CCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LWQNGALARLKKGETIDKLLYGGYSTISLGYAGLCECTYYMKGVTHTKPDGTEFALEVMK HCCCCCHHHHCCCCHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH HLNDICKKWAAETNIDFSLYGTPLESTTYKFAKCLQKRFGKIAGVTDKNYITNSYHVHVT HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEE ENINAFDKLKFESQFQELSPGGAISYVEVPDMQNNIPAVLKVMQYIYDNIMYAELNTKSD CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCEEEEEECCCHH YCQECGYTGQIQIITDDDGKLIWECPNCGNRNQDKMNVARRTCGYIGTQFWNQGRTQEIK HHHHCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH ERVLHL HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]