Click here to switch to the map view.

The map label for this gene is agaR [H]

Identifier: 238896641

GI number: 238896641

Start: 4620587

End: 4621426

Strand: Reverse

Name: agaR [H]

Synonym: KP1_4846

Alternate gene names: 238896641

Gene position: 4621426-4620587 (Counterclockwise)

Preceding gene: 238896652

Following gene: 238896640

Centisome position: 88.05

GC content: 55.83

Gene sequence:

>840_bases
GTGGCAAAACCGTCAACCAGCTTGCTGAAAAGGCGCTTGGACATCGCAGAGATCGTTCGTAAGAACGGCGAGATCAAAGT
CGACGATCTGGCAGAAATGCTGGCTGTTTCCGGGGTGACAATCCGTAACGATCTCAACTACCTCGAGCAGCAGGGTTACT
TGAAACGCTCTTTTGGCGGGGCGATTTATACCGCCCAGGCTGGCGCGCCGGTTGCGATGACCCGAGAAGCGCCTGCCGTC
AGAGATAAAGCGCTGGAGACGGAAATGGCTCGCCAGGTGGCGGCGCAGATAGAAAATGGCGAAACGCTGTTTCTAGGCCA
GGGTTCCATTTTGCGTAAAGTGATCCCCTTTCTGGCCAACAGAGAAGAGCTTTGCCTGCTATTAAATGATCTGGGCCACG
TCGCGCTGGCGCAGGAGTTTTTAAATGGGGAAACCGTTCTGCTTGGCGGGGTGTTGTCCGGTCAGGGGCGGATTGTGGAG
GGCGAACTGGCGCTGAAGGCGTTGGGTCATTACCGCCCTTCACGTGCGCTGATAGCGGTGGACCACATTGCTGAAGACGG
CACGCTAAGCGTGCGTAACGAGGTTACGGCACATTTGTTAAGCGAAGCGGTGGCCCAGAGTAAACGAGTCATTGCGATTG
TCGCTTCCCGGCCGGTCTATGGCGAGAAACGTTATGCTGTGGGTGAATTACAGCAGATCAGCAGCGTCGTGACCCCTCAG
GTCGTCGCGGCAGAGTACCATGCCTGCTTCCTCGCCGCGGGTTTGACCAACAGCTATACCAACAATGAATGCCTGACATG
GCTTAACACGGCTTTGCATAAGACAAACCAGGAGCGGTGA

Upstream 100 bases:

>100_bases
CTGATTGATGGCGGGATAGGGCTACAGCCGTGGTTTGACATTACAAGAGGGAAATTTAAAAATGAAAGTTATTCCAGGAG
AAAATAATAAGGCATAAACC

Downstream 100 bases:

>100_bases
TGAACGTAACCATTTGCACCATCGGCGAGCTGCTGGTGGAGTTTCTCGCCAAGGAAGAGAATCAGGGGTTTTCCCGTCCA
GGTGAATTTTGGGGGCCCTA

Product: putative DeoR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQAGAPVAMTREAPAV
RDKALETEMARQVAAQIENGETLFLGQGSILRKVIPFLANREELCLLLNDLGHVALAQEFLNGETVLLGGVLSGQGRIVE
GELALKALGHYRPSRALIAVDHIAEDGTLSVRNEVTAHLLSEAVAQSKRVIAIVASRPVYGEKRYAVGELQQISSVVTPQ
VVAAEYHACFLAAGLTNSYTNNECLTWLNTALHKTNQER

Sequences:

>Translated_279_residues
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQAGAPVAMTREAPAV
RDKALETEMARQVAAQIENGETLFLGQGSILRKVIPFLANREELCLLLNDLGHVALAQEFLNGETVLLGGVLSGQGRIVE
GELALKALGHYRPSRALIAVDHIAEDGTLSVRNEVTAHLLSEAVAQSKRVIAIVASRPVYGEKRYAVGELQQISSVVTPQ
VVAAEYHACFLAAGLTNSYTNNECLTWLNTALHKTNQER
>Mature_278_residues
AKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQAGAPVAMTREAPAVR
DKALETEMARQVAAQIENGETLFLGQGSILRKVIPFLANREELCLLLNDLGHVALAQEFLNGETVLLGGVLSGQGRIVEG
ELALKALGHYRPSRALIAVDHIAEDGTLSVRNEVTAHLLSEAVAQSKRVIAIVASRPVYGEKRYAVGELQQISSVVTPQV
VAAEYHACFLAAGLTNSYTNNECLTWLNTALHKTNQER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=231, Percent_Identity=25.5411255411255, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789519, Length=261, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789829, Length=235, Percent_Identity=27.2340425531915, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787540, Length=234, Percent_Identity=24.3589743589744, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082344, Length=227, Percent_Identity=23.3480176211454, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30302; Mature: 30171

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGG
CCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHCCC
AIYTAQAGAPVAMTREAPAVRDKALETEMARQVAAQIENGETLFLGQGSILRKVIPFLAN
EEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC
REELCLLLNDLGHVALAQEFLNGETVLLGGVLSGQGRIVEGELALKALGHYRPSRALIAV
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHHHHHHCCCCCCEEEEE
DHIAEDGTLSVRNEVTAHLLSEAVAQSKRVIAIVASRPVYGEKRYAVGELQQISSVVTPQ
EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHH
VVAAEYHACFLAAGLTNSYTNNECLTWLNTALHKTNQER
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLAVSGVTIRNDLNYLEQQGYLKRSFGG
CCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHCCC
AIYTAQAGAPVAMTREAPAVRDKALETEMARQVAAQIENGETLFLGQGSILRKVIPFLAN
EEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC
REELCLLLNDLGHVALAQEFLNGETVLLGGVLSGQGRIVEGELALKALGHYRPSRALIAV
CHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHHHHHHCCCCCCEEEEE
DHIAEDGTLSVRNEVTAHLLSEAVAQSKRVIAIVASRPVYGEKRYAVGELQQISSVVTPQ
EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCHH
VVAAEYHACFLAAGLTNSYTNNECLTWLNTALHKTNQER
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062173; 9278503; 9205837 [H]