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The map label for this gene is smpA [H]

Identifier: 238896062

GI number: 238896062

Start: 4030469

End: 4030810

Strand: Direct

Name: smpA [H]

Synonym: KP1_4195

Alternate gene names: 238896062

Gene position: 4030469-4030810 (Clockwise)

Preceding gene: 238896061

Following gene: 238896065

Centisome position: 76.79

GC content: 52.63

Gene sequence:

>342_bases
ATGCGCTGTAAAACGCTGACTGCTGCCGCAGCGGTTCTTCTTATGTTGACCGCAGGCTGTTCCACTCTGGAACGAGTGGT
TTACCGTCCTGACATCAACCAGGGTAACTATCTGGCACCAAACGATGTAGCAAAAATTCGTGTCGGTATGACGCAACAGC
AGGTAGCTTATGCTCTGGGGACGCCAATGATGACGGATCCGTTCGGCACCAATACCTGGTTCTATGTCTTCCGTCAGGAG
CCGGGCCACCAGAAAGTGACTCAGCAGACCCTAACCCTGACCTTCAACAGCGGCGGTGTGTTGACTAACATTGATAACAA
GCCTGCGCTGACCAGTCAGTAA

Upstream 100 bases:

>100_bases
ACCTGCAGCCGGAGGTTTCCAACGGCGCGAAGGTCTATTATTATCGGCATATTACAGATGAGCCACGTACTGCTCGGGCC
CAAAAAGGAATCAAATCACT

Downstream 100 bases:

>100_bases
GGCCCGGAAAAGCAAAAAGCGCTCGATGAGCGCTTTTTTTATGGCTGATAGTCGGTCTGCTGCGGGTTACTTTGCGGCGC
TTTTCTCTGCCCGCTGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQE
PGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ

Sequences:

>Translated_113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQE
PGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ
>Mature_113_residues
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQE
PGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=111, Percent_Identity=90.990990990991, Blast_Score=215, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 12413; Mature: 12413

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALG
CCCCHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCEECCCCCEEEEECCCHHHHHHHHC
TPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALG
CCCCHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCEECCCCCEEEEECCCHHHHHHHHC
TPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]