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The map label for this gene is yfiB [H]

Identifier: 238896049

GI number: 238896049

Start: 4018477

End: 4018959

Strand: Direct

Name: yfiB [H]

Synonym: KP1_4181

Alternate gene names: 238896049

Gene position: 4018477-4018959 (Clockwise)

Preceding gene: 238896048

Following gene: 238896057

Centisome position: 76.56

GC content: 57.97

Gene sequence:

>483_bases
ATGATCAGAAAATATTTCGTCCCCGCCCTGATGGCGGCGGCGCTTTTGACAGGTTGCCAGGCTCCTCAGGGAAAATTTAC
CCCCGAGCAGGTGGCGGCGATGAAATCTTACGGCTTTACTGAAAGCAATGGCGATTGGTCCCTGGGCTTATCCGATAGCA
TCCTGTTTGACAAGAATGACTACCGACTACGTCCCGACAGCCGCCAGCAGATCACCACGATGGCCTCGCGGCTGGCGGCT
ACCGGGATCACCCATAGCCGCCTTGAAGGCCATACCGATAATTATGGTGAAGATAGCTACAATGAAGCCCTGTCGCTTAA
GCGGGCCAACAGCGTGGCCGATGCCTGGGCGGAAGGCGCTCATGTCCCACGCAGTAATTTAGTCACCCGCGGCCTTGGCA
AAAAATACCCGATCGCCAGCAACGACACGGCGGCCGGGCGCGCCGAAAACCGCCGGGTAACGGTGGTCATCAGCACGCCG
TAA

Upstream 100 bases:

>100_bases
CACGCCACCGCGGAATCACTGCAAGAACTTGCCGATCAGAATATGTATCGGATGAAAAACCAACGTATCCAGCAGACGCT
GAAATAATAAAGGACTCATT

Downstream 100 bases:

>100_bases
GTCTTCACTTAGTCGCTGGACTTCATCATCCTCATTGCCGTTGCCGCGCGCCAGCGCAGGTAGTCAACGGCAATGAACAG
CAGCAGGCTGGCTCCCATTA

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MIRKYFVPALMAAALLTGCQAPQGKFTPEQVAAMKSYGFTESNGDWSLGLSDSILFDKNDYRLRPDSRQQITTMASRLAA
TGITHSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVISTP

Sequences:

>Translated_160_residues
MIRKYFVPALMAAALLTGCQAPQGKFTPEQVAAMKSYGFTESNGDWSLGLSDSILFDKNDYRLRPDSRQQITTMASRLAA
TGITHSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVISTP
>Mature_160_residues
MIRKYFVPALMAAALLTGCQAPQGKFTPEQVAAMKSYGFTESNGDWSLGLSDSILFDKNDYRLRPDSRQQITTMASRLAA
TGITHSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEGAHVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVISTP

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=160, Percent_Identity=74.375, Blast_Score=263, Evalue=4e-72,
Organism=Escherichia coli, GI48994946, Length=120, Percent_Identity=36.6666666666667, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17424; Mature: 17424

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKYFVPALMAAALLTGCQAPQGKFTPEQVAAMKSYGFTESNGDWSLGLSDSILFDKND
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCC
YRLRPDSRQQITTMASRLAATGITHSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEGA
CEECCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
HVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVISTP
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MIRKYFVPALMAAALLTGCQAPQGKFTPEQVAAMKSYGFTESNGDWSLGLSDSILFDKND
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCC
YRLRPDSRQQITTMASRLAATGITHSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEGA
CEECCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
HVPRSNLVTRGLGKKYPIASNDTAAGRAENRRVTVVISTP
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]