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The map label for this gene is ybbW [H]

Identifier: 238893472

GI number: 238893472

Start: 1317715

End: 1319169

Strand: Direct

Name: ybbW [H]

Synonym: KP1_1365

Alternate gene names: 238893472

Gene position: 1317715-1319169 (Clockwise)

Preceding gene: 238893471

Following gene: 238893473

Centisome position: 25.11

GC content: 47.7

Gene sequence:

>1455_bases
ATGGAACAAACTCAAGACCTATACAAAACCAGGGGCTATAGTGATGATCTATTGCCGAAATCAGACGCTCAGCGTAACTG
GAAAACATTCAATTATTTTACGTTGTGGATGGGTTCTGTACACAACGTACCAAATTATGTGATGGTGGGTGGTTTTTTTA
TCCTTGGACTTTCCACTTTTAGCATTATGATGGCGATAATATTAAGTGCCTTTATTATTGCCCTGGCCATGGTGTTTAAC
GGTGCTGCCGGAAGTAAATATGGCGTACCCTTCGCGATGATATTAAGAGCCTCATATGGAGTACGCGGTGCATTATTGCC
CGGACTGCTCAGAGGCGGTATCGCGGCGATTATGTGGTTTGGCTTGCAATGCTACGCCGGATCGCTGGCATTTCTGATCT
TATTAGGCAAATTATGGCCTGCGTTTCTGACGTTTGGCGGTGATTTTAAGCTGCTGGGGCTGTCATTGCCGGGGTTGATC
GCCTTTCTGGTGTTCTGGTTGATTAACGTCGGGATTGGCTTTGGTGGCGGAAAAGTGCTGAATAAATTTACCGCAATCCT
CAACCCCTGCATCTATATCGTTTTCGGCGGCATGGCTATCTGGGCCATTTCGCTGGTAGGATTCGGCCCGATCCTCGACT
ACCTGCCGACCGGGGTGGCAAAAGCGGAACATACCGGTTTCTTGTTCCTGGTGGTGATCAATGCGGTGGTGGCCGTCTGG
GCCGCTCCGGCAGTCAGCGCCTCGGATTTCACCCAGAACGCGCGCTCATTTCGCGAGCAGGCTATTGGTCAGACGCTTGG
ACTCGTGGTGGCCTATATTCTTTTTGCGGTCGCCGGCGTCTGTATTATCGCCGGGGCCAGTATCCACTATGGTATGGATA
CCTGGAACGTGCTGGATATAGTGCAGAAATGGGACAGCCTGTTTGCCTCGTTCTTTGCGGTGCTGGTGATATTGATGACC
ACGATTTCCACCAACGCTACCGGTAATATTATACCGGCAGGCTATCAGATCGCGGCGATTGCCCCAGCCAAACTGACCTA
TAAAAATGGCGTGCTCATCGCCAGTATTATTAGCTTACTGATTTGCCCATGGAAATTAATGGAGAATCAAGACAGTATTT
ACCTCTTCCTCGATATTATTGGCGGGATGTTGGGGCCGGTTATTGGTGTAATGATGGCTCACTATTTCATCGTTATGCGT
GGGCAAATAAATCTTAATGAACTTTATACCACACCAGGAGATTATAAATATTTTGATAATGGTTTTAATGTTACCGCATT
CCTGGTAACCATTGTAGCAGTCATTTTATCGCTCGGTGGGAAGTTTATTCCTTTGCTGGAACCTTTCTCCCGTGTGTCAT
GGTTTGTCGGTGTTATTGTCGCTTTTGTTGCGTACGCTTTGCTGAAGAAACGGGCGCAACCCAATAATCTGACACGGCCA
AATACTGTTAGTTAA

Upstream 100 bases:

>100_bases
CGTCAAAGTCCATCACTGTATAATAAAAATAAATAATAAAAATTGTTGTTCCACATAGCTAAACCTACAAACGTAATCCG
ATGCGTATTAAGAGGGAATT

Downstream 100 bases:

>100_bases
TTTAATTTTAACCAGGAAAGTTTATTTCATGGATGAAGCATTACCGGCCAAAGCCATTGTTATTGCGGCACGCAATGTCG
CAGCAGAAGTATGGCGGCTG

Product: allantoin permease

Products: NA

Alternate protein names: Allantoin transport protein [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MEQTQDLYKTRGYSDDLLPKSDAQRNWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMMAIILSAFIIALAMVFN
GAAGSKYGVPFAMILRASYGVRGALLPGLLRGGIAAIMWFGLQCYAGSLAFLILLGKLWPAFLTFGGDFKLLGLSLPGLI
AFLVFWLINVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGFGPILDYLPTGVAKAEHTGFLFLVVINAVVAVW
AAPAVSASDFTQNARSFREQAIGQTLGLVVAYILFAVAGVCIIAGASIHYGMDTWNVLDIVQKWDSLFASFFAVLVILMT
TISTNATGNIIPAGYQIAAIAPAKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFIVMR
GQINLNELYTTPGDYKYFDNGFNVTAFLVTIVAVILSLGGKFIPLLEPFSRVSWFVGVIVAFVAYALLKKRAQPNNLTRP
NTVS

Sequences:

>Translated_484_residues
MEQTQDLYKTRGYSDDLLPKSDAQRNWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMMAIILSAFIIALAMVFN
GAAGSKYGVPFAMILRASYGVRGALLPGLLRGGIAAIMWFGLQCYAGSLAFLILLGKLWPAFLTFGGDFKLLGLSLPGLI
AFLVFWLINVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGFGPILDYLPTGVAKAEHTGFLFLVVINAVVAVW
AAPAVSASDFTQNARSFREQAIGQTLGLVVAYILFAVAGVCIIAGASIHYGMDTWNVLDIVQKWDSLFASFFAVLVILMT
TISTNATGNIIPAGYQIAAIAPAKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFIVMR
GQINLNELYTTPGDYKYFDNGFNVTAFLVTIVAVILSLGGKFIPLLEPFSRVSWFVGVIVAFVAYALLKKRAQPNNLTRP
NTVS
>Mature_484_residues
MEQTQDLYKTRGYSDDLLPKSDAQRNWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMMAIILSAFIIALAMVFN
GAAGSKYGVPFAMILRASYGVRGALLPGLLRGGIAAIMWFGLQCYAGSLAFLILLGKLWPAFLTFGGDFKLLGLSLPGLI
AFLVFWLINVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGFGPILDYLPTGVAKAEHTGFLFLVVINAVVAVW
AAPAVSASDFTQNARSFREQAIGQTLGLVVAYILFAVAGVCIIAGASIHYGMDTWNVLDIVQKWDSLFASFFAVLVILMT
TISTNATGNIIPAGYQIAAIAPAKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFIVMR
GQINLNELYTTPGDYKYFDNGFNVTAFLVTIVAVILSLGGKFIPLLEPFSRVSWFVGVIVAFVAYALLKKRAQPNNLTRP
NTVS

Specific function: Transport of allantoin [H]

COG id: COG1953

COG function: function code FH; Cytosine/uracil/thiamine/allantoin permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the purine-cytosine permease family [H]

Homologues:

Organism=Escherichia coli, GI87081749, Length=483, Percent_Identity=86.9565217391304, Blast_Score=815, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6322219, Length=445, Percent_Identity=24.2696629213483, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6319495, Length=436, Percent_Identity=24.0825688073394, Blast_Score=121, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6319429, Length=484, Percent_Identity=24.3801652892562, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6324766, Length=436, Percent_Identity=20.8715596330275, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6323266, Length=446, Percent_Identity=19.9551569506726, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324645, Length=437, Percent_Identity=18.7643020594966, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001248
- InterPro:   IPR012681 [H]

Pfam domain/function: PF02133 Transp_cyt_pur [H]

EC number: NA

Molecular weight: Translated: 52500; Mature: 52500

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure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CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10601204; 9278503 [H]