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The map label for this gene is ganA [H]

Identifier: 238893419

GI number: 238893419

Start: 1259084

End: 1261141

Strand: Direct

Name: ganA [H]

Synonym: KP1_1306

Alternate gene names: 238893419

Gene position: 1259084-1261141 (Clockwise)

Preceding gene: 238893418

Following gene: 238893420

Centisome position: 23.99

GC content: 58.21

Gene sequence:

>2058_bases
ATGAATAAATTTGCACCTTTACATCCGAAGGTTAGTACGCTGCTGCATGGCGCGGATTATAATCCGGAGCAATGGGAGAA
TGACCCCGATATTATTGATAAAGACATTGCCATGATGCAGCAGGCAAAATGCAATGTGATGTCGGTGGGAATATTTAGCT
GGGCGAAACTGGAGCCACGCGAAGGGGTATTTAATTTCGCCTGGCTGGATATTATCCTCGATAAACTGTATGCCGCCGGC
ATTCATGTGTTTCTGGCCACGCCGAGCGGCGCGCGTCCGGCGTGGATGTCGCAGCGCTATCCGCAGGTTCTGCGGGTGGG
GCGCGATCGGGTGCCGGCCCTGCACGGCGGCCGTCACAACCACTGTATGTCGTCACCGGTCTATCGCGAGAAAACCCTGC
AAATCAATACCCTGCTGGCAGAACGTTATTCCTCACACCCGGCGGTGCTGGGCTGGCATATTTCCAACGAATATGGCGGT
GAATGCCATTGCGATCTCTGCCAGAACCGTTTTCGCGACTGGCTGAAGGCGCGTTACCAGACCCTGGAGAACCTCAACCA
GGCCTGGTGGAGCACCTTCTGGAGTCATACCTATACCGACTGGTCGCAGATTGAATCGCCTGCGCCGCAGGGCGAGATGT
CGATCCACGGTCTTAATCTTGACTGGCATCGCTTTAACACCGCTCAGGTGACCGATTTCTGCCGCCATGAAATTGCTCCG
CTGAAGGCGGCGAATGCTTCCCTGCCGGTGACTACCAACTTTATGGAATATTTCTACGATTACGACTACTGGCAGCTGGC
GGAGGCGCTGGATTTCATCTCCTGGGACAGCTATCCGATGTGGCACCGCGATAAAGATGAAACCGCGCTGGCCTGCTACA
CCGCGATGTATCACGACATGATGCGCAGCCTGAAGGGCGGCAAACCGTTTGTGCTGATGGAGTCCACCCCGGGCGCCACC
AACTGGCAGCCGACCAGCAAACTGAAGAAGCCGGGAATGCATATTCTTTCCTCGCTACAGGCGGTGGCGCATGGCGCCGA
CTCGGTGCAGTATTTCCAGTGGCGGAAAAGCCGCGGTTCGGTTGAGAAATTTCACGGCGCAGTTGTCGACCACGTCGGAC
ATATTGATACCCGCATTGGCCGCGAAGTCTGCCAGCTCGGCGAGATCCTCAGCAAGCTGCCGGAGGTGAGGGGCTGTCGC
ACCGAGGCGAAAGTAGCGATTATCTTCGACCAGCAGAACCGCTGGGCGCTGGATGACGCCCAGGGGCCGCGCAATCTTGG
GATGGAATATGAGAAGACGGTCAACGAGCACTACCGCCCGTTCTGGGAGCAGGGCATCGCCGTCGATGTGATTGACGCCG
ATGTCGATTTAACGCCGTATCAGTTAGTGATTGCCCCGATGTTATATATGGTGCGCGACGGCTTTGCCGGTCGGGCGGAG
GCGTTTGTCGCCAACGGCGGCCACCTGGTGACCACCTACTGGACCGGTATCGTCAATGAGTCCGATCTCTGCTATCTCGG
CGGCTTCCCGGGCCCGCTGCGCAATCTGCTGGGGATCTGGGCGGAAGAGATCGACTGCCTGAATGACGGCGAGTTTAATC
TGGTGCAGGGGCTTGCCGGGAATCAGTGCGGTCTGCAGGGCCCTTATCAGGTGCGCCATCTCTGCGAACTGATCCATATC
GAGAGCGCCCAGGCGCTGGCCACCTACCGGGATGATTTTTATGCCGGACGGCCGGCTGTGACGGTGAACGCGTTCGGGAA
AGGCAAAGCCTGGCATGTGGCCTCCCGCAACGATTTAGCCTTCCAGCGCGATTTCTTTACCGCCCTGAGCAAGGAGCTGG
CCCTGCCGCGGGCGATAGCGACGGAGTTACCACCCGGCGTGGTGGCGACTGCGCGCACCGACGGTGACAACGCATTTATC
TTCCTGCAGAACTACAGCGCGCAAAACCATACCCTGACCCTGCCGCAAGGGTATTGGGATTGCCTGACCGACGCGGCGGT
ATCGGCTCCACTGACCCTGTCGGCATGGGATTGCCGTATTCTCCGTCGTCACGCGTAA

Upstream 100 bases:

>100_bases
GCACGTGAAAATCAGGCGCTATTTGATTGCCAGGGAAAAGTATTGCCGTCGGTAAAAGTTTTTAATTAATTTTTTTGTCG
TCTTTTTCAGGAAGTTTATT

Downstream 100 bases:

>100_bases
TTTCTTCTTCTCCACGCCTGCTCTGACGAGCAGGCTTTTTTTTATCTTAAACCTGGAGTTTATTATGGTGAGTTTAAAAT
CCTTCCTGCACTATTTCTCC

Product: putative glycoside hydrolase

Products: NA

Alternate protein names: Beta-gal; Beta-1,4-galactooligomerase; Galactooligomerase [H]

Number of amino acids: Translated: 685; Mature: 685

Protein sequence:

>685_residues
MNKFAPLHPKVSTLLHGADYNPEQWENDPDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPREGVFNFAWLDIILDKLYAAG
IHVFLATPSGARPAWMSQRYPQVLRVGRDRVPALHGGRHNHCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGG
ECHCDLCQNRFRDWLKARYQTLENLNQAWWSTFWSHTYTDWSQIESPAPQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAP
LKAANASLPVTTNFMEYFYDYDYWQLAEALDFISWDSYPMWHRDKDETALACYTAMYHDMMRSLKGGKPFVLMESTPGAT
NWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGSVEKFHGAVVDHVGHIDTRIGREVCQLGEILSKLPEVRGCR
TEAKVAIIFDQQNRWALDDAQGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAE
AFVANGGHLVTTYWTGIVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQGLAGNQCGLQGPYQVRHLCELIHI
ESAQALATYRDDFYAGRPAVTVNAFGKGKAWHVASRNDLAFQRDFFTALSKELALPRAIATELPPGVVATARTDGDNAFI
FLQNYSAQNHTLTLPQGYWDCLTDAAVSAPLTLSAWDCRILRRHA

Sequences:

>Translated_685_residues
MNKFAPLHPKVSTLLHGADYNPEQWENDPDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPREGVFNFAWLDIILDKLYAAG
IHVFLATPSGARPAWMSQRYPQVLRVGRDRVPALHGGRHNHCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGG
ECHCDLCQNRFRDWLKARYQTLENLNQAWWSTFWSHTYTDWSQIESPAPQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAP
LKAANASLPVTTNFMEYFYDYDYWQLAEALDFISWDSYPMWHRDKDETALACYTAMYHDMMRSLKGGKPFVLMESTPGAT
NWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGSVEKFHGAVVDHVGHIDTRIGREVCQLGEILSKLPEVRGCR
TEAKVAIIFDQQNRWALDDAQGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAE
AFVANGGHLVTTYWTGIVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQGLAGNQCGLQGPYQVRHLCELIHI
ESAQALATYRDDFYAGRPAVTVNAFGKGKAWHVASRNDLAFQRDFFTALSKELALPRAIATELPPGVVATARTDGDNAFI
FLQNYSAQNHTLTLPQGYWDCLTDAAVSAPLTLSAWDCRILRRHA
>Mature_685_residues
MNKFAPLHPKVSTLLHGADYNPEQWENDPDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPREGVFNFAWLDIILDKLYAAG
IHVFLATPSGARPAWMSQRYPQVLRVGRDRVPALHGGRHNHCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGG
ECHCDLCQNRFRDWLKARYQTLENLNQAWWSTFWSHTYTDWSQIESPAPQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAP
LKAANASLPVTTNFMEYFYDYDYWQLAEALDFISWDSYPMWHRDKDETALACYTAMYHDMMRSLKGGKPFVLMESTPGAT
NWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGSVEKFHGAVVDHVGHIDTRIGREVCQLGEILSKLPEVRGCR
TEAKVAIIFDQQNRWALDDAQGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAE
AFVANGGHLVTTYWTGIVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQGLAGNQCGLQGPYQVRHLCELIHI
ESAQALATYRDDFYAGRPAVTVNAFGKGKAWHVASRNDLAFQRDFFTALSKELALPRAIATELPPGVVATARTDGDNAFI
FLQNYSAQNHTLTLPQGYWDCLTDAAVSAPLTLSAWDCRILRRHA

Specific function: Hydrolyzes oligosaccharides released by the endo-1,4- beta-galactosidase galA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source [H]

COG id: COG1874

COG function: function code G; Beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 42 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013739
- InterPro:   IPR013738
- InterPro:   IPR013780
- InterPro:   IPR003476
- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]

EC number: =3.2.1.23 [H]

Molecular weight: Translated: 77588; Mature: 77588

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFAPLHPKVSTLLHGADYNPEQWENDPDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPR
CCCCCCCCCCHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCEECCCCC
EGVFNFAWLDIILDKLYAAGIHVFLATPSGARPAWMSQRYPQVLRVGRDRVPALHGGRHN
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCC
HCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGGECHCDLCQNRFRDWLKARYQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH
TLENLNQAWWSTFWSHTYTDWSQIESPAPQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAP
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHHCCC
LKAANASLPVTTNFMEYFYDYDYWQLAEALDFISWDSYPMWHRDKDETALACYTAMYHDM
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
MRSLKGGKPFVLMESTPGATNWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGS
HHHHCCCCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
VEKFHGAVVDHVGHIDTRIGREVCQLGEILSKLPEVRGCRTEAKVAIIFDQQNRWALDDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEEEEECCCCEECCCC
QGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAE
CCCHHCCCHHHHHHHHHCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCE
AFVANGGHLVTTYWTGIVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQGLAG
EEEECCCEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
NQCGLQGPYQVRHLCELIHIESAQALATYRDDFYAGRPAVTVNAFGKGKAWHVASRNDLA
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCH
FQRDFFTALSKELALPRAIATELPPGVVATARTDGDNAFIFLQNYSAQNHTLTLPQGYWD
HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCEEECCCHHHH
CLTDAAVSAPLTLSAWDCRILRRHA
HHHHHHHCCCEEEEHHHHHHHHHCC
>Mature Secondary Structure
MNKFAPLHPKVSTLLHGADYNPEQWENDPDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPR
CCCCCCCCCCHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCEECCCCC
EGVFNFAWLDIILDKLYAAGIHVFLATPSGARPAWMSQRYPQVLRVGRDRVPALHGGRHN
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCC
HCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGGECHCDLCQNRFRDWLKARYQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHH
TLENLNQAWWSTFWSHTYTDWSQIESPAPQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAP
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHHCCC
LKAANASLPVTTNFMEYFYDYDYWQLAEALDFISWDSYPMWHRDKDETALACYTAMYHDM
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
MRSLKGGKPFVLMESTPGATNWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGS
HHHHCCCCCEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
VEKFHGAVVDHVGHIDTRIGREVCQLGEILSKLPEVRGCRTEAKVAIIFDQQNRWALDDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEEEEECCCCEECCCC
QGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAE
CCCHHCCCHHHHHHHHHCCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCE
AFVANGGHLVTTYWTGIVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQGLAG
EEEECCCEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
NQCGLQGPYQVRHLCELIHIESAQALATYRDDFYAGRPAVTVNAFGKGKAWHVASRNDLA
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCH
FQRDFFTALSKELALPRAIATELPPGVVATARTDGDNAFIFLQNYSAQNHTLTLPQGYWD
HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCEEECCCHHHH
CLTDAAVSAPLTLSAWDCRILRRHA
HHHHHHHCCCEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA