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The map label for this gene is yabN [H]

Identifier: 238893044

GI number: 238893044

Start: 864705

End: 866360

Strand: Reverse

Name: yabN [H]

Synonym: KP1_0881

Alternate gene names: 238893044

Gene position: 866360-864705 (Counterclockwise)

Preceding gene: 238893047

Following gene: 238893043

Centisome position: 16.51

GC content: 60.93

Gene sequence:

>1656_bases
ATGTCTTCCGGCCGTCTGCAACAACAGTTCATTCGCCTATGGCAGTGCTGCGACGGCAAGTCGCAGGAGACCACCCTTAA
CGAGCTGGCGGAAATGCTGAGCTGCTCGCGCCGCCATATGCGCACCCTGCTCAATATGATGGAGTCCCGCGGCTGGCTGA
CCTGGGAAGCGGAGGCAGGCCGCGGCAAGCGTTCGCGGCTAACCTTTCTCTATACCGGCCTCGCCCTTCAGCAGCAACGT
GCCGAAGATCTCCTTGAGCAGGATCGCATCGATCAGCTGGTGCAGTTGGTCGGCGATAAGGCTGCCGTCCGCCAGATGCT
GGTCTCGCATCTCGGCCGCAGCTTCCGCCAGGGGCGGCACATCCTGCGCGTGCTCTACTATCGTCCGATGAAGAATTTGC
TGCCCGGTAGCGCGCTGCGGCGTTCGGAAACGCATATTGCCCGGCAAATATTCAGCGCCCTGACGCGGGTAAATGAGGAA
AATGGGGAACTGGAAGCCGATATTGCCCACCACTGGCAGCAGCTGACCCCCACCCACTGGCGCTTTTTCCTCCGTCCCGG
CATCCATTTTCACCATGGCCGTGAGCTGGAGATGGCCGATGTGATCGCCTCTCTGCAGCGCAGCAATGCCCTGCCGCTCT
ATTCACATATCGAACGCATCGAATCGCCCACCGCCTGGACCCTGGATATTCATCTGCGCCAGCCCGACCGCTGGCTGCCC
TGGCTGCTGGGGCAGGTACCGGCGATGGTGCTGCCGCAGGAGTGGCAGACCATGAACCACTTTTCCTCCATGCCGGTCGG
CACCGGCCCCTATGCCGTGGTGCGTAACAACCAGAATCAGCTCAAGATCCATGCCTTTGAGGACTATTTTGGCTACCGGG
CGCTGATCGATGAGGTGAACGTCTGGGTGCTGCCGGAGATTAGCGAAGAGCCTAACGGCGGCCTGACGCTGCAGGGCAAT
ACCGAAAGCGAAAAAGCGGTAGAGAGTCGCCTGGAAGAGGGCTGCTATTACCTGCTGTTCGACTCGCGAAGCCCGCTGGG
GGCCAACGACGCGGTGCGCCGCTGGCTAAGCTATCTGTTTCAGCCCGCCAACCTGCTCTACCATGCGGGCGAACACTACC
AGGGCAACTGGTTTCCCGCCTACGGCCTGCTGCCGCGCTGGCATCATGCCAGCAACCACGCCTGCGAGAAGCCGGCGGGG
CTGGAGACAGTCACCCTTACCTACTACCGCGATCACGTCGAACATCGGGTGATCGGCGGGATCATGCGCGACCTGCTGGC
GGCGCATCAGGTAAAGCTGGAGATCCAGGAGCTGGAGTACGATGCCTGGCATCGCGGCGAGGTGGTCAGCGATATCTGGC
TCAACAGCGTGAACTTCACCTTACCGATCGAATTTTCGCTCTTCGCCTATCTGTACGAAGTCCCGCTGATTCAGCGCTGC
ATTCCCATTGACTGGCAGGCAGACGCCTGCCGCTGGCGAGCAGGAGAGTTTAATCCGGCCACCTGGAGCCAGCGGCTGCT
GGCCAGGCAACATATCGTGCCGCTGATCCACCACTGGCTGATGATTCAGGGTCAGCGCAGTATGCGCGGCGTGAGGATGA
ATACCCTCGGCTGGTTCGATTTTAAATCCGCATGGTTTGCGCCGCCGGAGCCGTAA

Upstream 100 bases:

>100_bases
TAGACCTCATCATATTCACCTCCTCGCTTCATCGGGATTCATTATTGGCTTAATATAGGAAGTAATAAATTGCTGAGTTT
TGCGCAGGAGTTCCCCTTTT

Downstream 100 bases:

>100_bases
GCGCTTTCCGTCATCTGACAAAATCATTACACTAAGGCCGTTCTCAACGGGGTGCTAATAAACATACGTAATATCATTCA
AGTTGCATCAAGGCAGCAAG

Product: transcriptional regulator SgrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSSGRLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAGRGKRSRLTFLYTGLALQQQR
AEDLLEQDRIDQLVQLVGDKAAVRQMLVSHLGRSFRQGRHILRVLYYRPMKNLLPGSALRRSETHIARQIFSALTRVNEE
NGELEADIAHHWQQLTPTHWRFFLRPGIHFHHGRELEMADVIASLQRSNALPLYSHIERIESPTAWTLDIHLRQPDRWLP
WLLGQVPAMVLPQEWQTMNHFSSMPVGTGPYAVVRNNQNQLKIHAFEDYFGYRALIDEVNVWVLPEISEEPNGGLTLQGN
TESEKAVESRLEEGCYYLLFDSRSPLGANDAVRRWLSYLFQPANLLYHAGEHYQGNWFPAYGLLPRWHHASNHACEKPAG
LETVTLTYYRDHVEHRVIGGIMRDLLAAHQVKLEIQELEYDAWHRGEVVSDIWLNSVNFTLPIEFSLFAYLYEVPLIQRC
IPIDWQADACRWRAGEFNPATWSQRLLARQHIVPLIHHWLMIQGQRSMRGVRMNTLGWFDFKSAWFAPPEP

Sequences:

>Translated_551_residues
MSSGRLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAGRGKRSRLTFLYTGLALQQQR
AEDLLEQDRIDQLVQLVGDKAAVRQMLVSHLGRSFRQGRHILRVLYYRPMKNLLPGSALRRSETHIARQIFSALTRVNEE
NGELEADIAHHWQQLTPTHWRFFLRPGIHFHHGRELEMADVIASLQRSNALPLYSHIERIESPTAWTLDIHLRQPDRWLP
WLLGQVPAMVLPQEWQTMNHFSSMPVGTGPYAVVRNNQNQLKIHAFEDYFGYRALIDEVNVWVLPEISEEPNGGLTLQGN
TESEKAVESRLEEGCYYLLFDSRSPLGANDAVRRWLSYLFQPANLLYHAGEHYQGNWFPAYGLLPRWHHASNHACEKPAG
LETVTLTYYRDHVEHRVIGGIMRDLLAAHQVKLEIQELEYDAWHRGEVVSDIWLNSVNFTLPIEFSLFAYLYEVPLIQRC
IPIDWQADACRWRAGEFNPATWSQRLLARQHIVPLIHHWLMIQGQRSMRGVRMNTLGWFDFKSAWFAPPEP
>Mature_550_residues
SSGRLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAGRGKRSRLTFLYTGLALQQQRA
EDLLEQDRIDQLVQLVGDKAAVRQMLVSHLGRSFRQGRHILRVLYYRPMKNLLPGSALRRSETHIARQIFSALTRVNEEN
GELEADIAHHWQQLTPTHWRFFLRPGIHFHHGRELEMADVIASLQRSNALPLYSHIERIESPTAWTLDIHLRQPDRWLPW
LLGQVPAMVLPQEWQTMNHFSSMPVGTGPYAVVRNNQNQLKIHAFEDYFGYRALIDEVNVWVLPEISEEPNGGLTLQGNT
ESEKAVESRLEEGCYYLLFDSRSPLGANDAVRRWLSYLFQPANLLYHAGEHYQGNWFPAYGLLPRWHHASNHACEKPAGL
ETVTLTYYRDHVEHRVIGGIMRDLLAAHQVKLEIQELEYDAWHRGEVVSDIWLNSVNFTLPIEFSLFAYLYEVPLIQRCI
PIDWQADACRWRAGEFNPATWSQRLLARQHIVPLIHHWLMIQGQRSMRGVRMNTLGWFDFKSAWFAPPEP

Specific function: Activates the small RNA gene sgrS under glucose- phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786256, Length=551, Percent_Identity=78.2214156079855, Blast_Score=921, Evalue=0.0,
Organism=Escherichia coli, GI1786650, Length=571, Percent_Identity=28.3712784588441, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 64251; Mature: 64120

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGRLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAG
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAAVRQMLVSHLGRSFRQGRH
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ILRVLYYRPMKNLLPGSALRRSETHIARQIFSALTRVNEENGELEADIAHHWQQLTPTHW
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCHHH
RFFLRPGIHFHHGRELEMADVIASLQRSNALPLYSHIERIESPTAWTLDIHLRQPDRWLP
EEEECCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHH
WLLGQVPAMVLPQEWQTMNHFSSMPVGTGPYAVVRNNQNQLKIHAFEDYFGYRALIDEVN
HHHHCCCHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHCCC
VWVLPEISEEPNGGLTLQGNTESEKAVESRLEEGCYYLLFDSRSPLGANDAVRRWLSYLF
EEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH
QPANLLYHAGEHYQGNWFPAYGLLPRWHHASNHACEKPAGLETVTLTYYRDHVEHRVIGG
CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
IMRDLLAAHQVKLEIQELEYDAWHRGEVVSDIWLNSVNFTLPIEFSLFAYLYEVPLIQRC
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
IPIDWQADACRWRAGEFNPATWSQRLLARQHIVPLIHHWLMIQGQRSMRGVRMNTLGWFD
CCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEECCCEEEE
FKSAWFAPPEP
CCCCCCCCCCC
>Mature Secondary Structure 
SSGRLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAG
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAAVRQMLVSHLGRSFRQGRH
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ILRVLYYRPMKNLLPGSALRRSETHIARQIFSALTRVNEENGELEADIAHHWQQLTPTHW
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCHHH
RFFLRPGIHFHHGRELEMADVIASLQRSNALPLYSHIERIESPTAWTLDIHLRQPDRWLP
EEEECCCCEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHH
WLLGQVPAMVLPQEWQTMNHFSSMPVGTGPYAVVRNNQNQLKIHAFEDYFGYRALIDEVN
HHHHCCCHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHCCC
VWVLPEISEEPNGGLTLQGNTESEKAVESRLEEGCYYLLFDSRSPLGANDAVRRWLSYLF
EEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH
QPANLLYHAGEHYQGNWFPAYGLLPRWHHASNHACEKPAGLETVTLTYYRDHVEHRVIGG
CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
IMRDLLAAHQVKLEIQELEYDAWHRGEVVSDIWLNSVNFTLPIEFSLFAYLYEVPLIQRC
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
IPIDWQADACRWRAGEFNPATWSQRLLARQHIVPLIHHWLMIQGQRSMRGVRMNTLGWFD
CCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEECCCEEEE
FKSAWFAPPEP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]