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The map label for this gene is ybfI [H]

Identifier: 238892901

GI number: 238892901

Start: 710688

End: 711671

Strand: Reverse

Name: ybfI [H]

Synonym: KP1_0722

Alternate gene names: 238892901

Gene position: 711671-710688 (Counterclockwise)

Preceding gene: 238892904

Following gene: 238892900

Centisome position: 13.56

GC content: 61.89

Gene sequence:

>984_bases
ATGTCTCTGGCACCCCGGAAACCGGGATTTTACATTCCGCTACGAAAACATATTTCCCCGGACTGCAAGCGTGACATCCT
TTTTCGACGCGGTACGCAAATCCAGGCGGGCGACAGCCTCGGCGCAGCATGCTATAAACGGCTTATCCCCGCAGCAAAGG
CCAAAGCAGTGAACCATACCCGAGATATTCCCCAAACCTTCTGGCGAGACGATCGTCTGCCGTGGCTGGAGCTGCGCAGC
ACCTGGCGCAGCCGCCAGGCCTATAAGCGCCACAGCCACCCCCAGCTTTCCGTAGGGGCGATTATCGAGGGGGAAACGCG
CTGCCTGTGCGCTGGCCAGGAGTACCTGCTGCAGCCCGGGGATCTGATCGTGATCCCGCCGCACGCGCCGCATAGATGTA
ATCCGCTGCATGGCAGGCCGCGCAGCTATCACATGCTTTACCTGGACGCGACATGGTGCCACGCGCAGCGCCCGGATATT
CCCCCTGGCGCCAGTATCACCTCGCCGCAGCCGCTGCTGCGCGACAGCCCTCTCTTTGCCAGTTTCCAGCAGGTTGTCGC
CCTGATGAGCCGCGGGAGCCTTGAACAACTGCCCGCCCGGCTGGCGCAACTCCTGCACGCGCTGCCGCTGTGCGCCGCCG
CGCCGCAGGCGCCACATCACGCCAGCGCCCTGCTGTTTCAGCGCCTGGCGATGGATCTGCCGGCGTCGCCGTCGCTGGAT
AAGCTGGCCCACGACAGCGCGCTTCGTAAAGAGACCGTTATCCGCGCCGTGAAACAAGATACCGGCCTGACGCCTGCCAG
TTTGATCAACATGGCGCGCATCGAATATGCGAAAACGCGCTTACGCGCCGGGGATCCTATCGCCGACGTCGGCTATCAGG
CCGGCTTTGCCGATCAGAGCCATTTCCATAAAACCTTTGTCAGCTATACCGCCGCCACGCCGCGGCAGTATGCGCAAAGC
AGATCAATATCTGACAATAAGTAA

Upstream 100 bases:

>100_bases
AGGAACTGTTTAAACACCGCATCATGCGGCGTCGAGGTGGTGCCCTTTGCCATCGGCTCATCCCTGCCTGCTTATCCTGC
AGGGACTCTACATCCCATGA

Downstream 100 bases:

>100_bases
TACGCCACCTGGCGTAGGGTGGCCTCTGCACCATTATCGAGGCCACTATGCATACCTTATCGACGCTCTTTCCCGCCGTC
TTCCCGGCGCTAGCCCTGTC

Product: negative transcriptional regulator of cel operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSLAPRKPGFYIPLRKHISPDCKRDILFRRGTQIQAGDSLGAACYKRLIPAAKAKAVNHTRDIPQTFWRDDRLPWLELRS
TWRSRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHRCNPLHGRPRSYHMLYLDATWCHAQRPDI
PPGASITSPQPLLRDSPLFASFQQVVALMSRGSLEQLPARLAQLLHALPLCAAAPQAPHHASALLFQRLAMDLPASPSLD
KLAHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLRAGDPIADVGYQAGFADQSHFHKTFVSYTAATPRQYAQS
RSISDNK

Sequences:

>Translated_327_residues
MSLAPRKPGFYIPLRKHISPDCKRDILFRRGTQIQAGDSLGAACYKRLIPAAKAKAVNHTRDIPQTFWRDDRLPWLELRS
TWRSRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHRCNPLHGRPRSYHMLYLDATWCHAQRPDI
PPGASITSPQPLLRDSPLFASFQQVVALMSRGSLEQLPARLAQLLHALPLCAAAPQAPHHASALLFQRLAMDLPASPSLD
KLAHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLRAGDPIADVGYQAGFADQSHFHKTFVSYTAATPRQYAQS
RSISDNK
>Mature_326_residues
SLAPRKPGFYIPLRKHISPDCKRDILFRRGTQIQAGDSLGAACYKRLIPAAKAKAVNHTRDIPQTFWRDDRLPWLELRST
WRSRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHRCNPLHGRPRSYHMLYLDATWCHAQRPDIP
PGASITSPQPLLRDSPLFASFQQVVALMSRGSLEQLPARLAQLLHALPLCAAAPQAPHHASALLFQRLAMDLPASPSLDK
LAHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLRAGDPIADVGYQAGFADQSHFHKTFVSYTAATPRQYAQSR
SISDNK

Specific function: Repressor For The Chbbcarfg Operon (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36439; Mature: 36308

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAPRKPGFYIPLRKHISPDCKRDILFRRGTQIQAGDSLGAACYKRLIPAAKAKAVNHT
CCCCCCCCCEEECHHHHCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RDIPQTFWRDDRLPWLELRSTWRSRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCHHHHCCCC
DLIVIPPHAPHRCNPLHGRPRSYHMLYLDATWCHAQRPDIPPGASITSPQPLLRDSPLFA
CEEEECCCCCCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
SFQQVVALMSRGSLEQLPARLAQLLHALPLCAAAPQAPHHASALLFQRLAMDLPASPSLD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHH
KLAHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLRAGDPIADVGYQAGFADQS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHH
HFHKTFVSYTAATPRQYAQSRSISDNK
HHHHHHHHHHHCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLAPRKPGFYIPLRKHISPDCKRDILFRRGTQIQAGDSLGAACYKRLIPAAKAKAVNHT
CCCCCCCCEEECHHHHCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHH
RDIPQTFWRDDRLPWLELRSTWRSRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCHHHHCCCC
DLIVIPPHAPHRCNPLHGRPRSYHMLYLDATWCHAQRPDIPPGASITSPQPLLRDSPLFA
CEEEECCCCCCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
SFQQVVALMSRGSLEQLPARLAQLLHALPLCAAAPQAPHHASALLFQRLAMDLPASPSLD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHH
KLAHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLRAGDPIADVGYQAGFADQS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHH
HFHKTFVSYTAATPRQYAQSRSISDNK
HHHHHHHHHHHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]