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The map label for this gene is rbsC [H]

Identifier: 238892575

GI number: 238892575

Start: 361966

End: 362964

Strand: Reverse

Name: rbsC [H]

Synonym: KP1_0352

Alternate gene names: 238892575

Gene position: 362964-361966 (Counterclockwise)

Preceding gene: 238892576

Following gene: 238892574

Centisome position: 6.92

GC content: 61.36

Gene sequence:

>999_bases
ATGAGCATACCGAAAGAGAACTCCGCGCCGGTCGCGAAATCCGCTTCAGCGAAAAAAATGTTGATGGGCGACCTGATGCA
GACCGTCGGCATTCTGCCGATCCTCATCCTGATCGTCGCCGTTTTCGGCTTTATCGCCCCCAACTTTTTCACGGAAAGCA
ATCTGCTGAATATCACCCGCCAGGCCTCGATCAACATTGTGCTGGCGGCGGGAATGACCTTCATCATCCTCACCGGCGGC
ATTGACCTTTCCGTCGGCTCCATCCTTGGCACCACCGCAGTGGCCGCGATGGTGGTGTCGCTGATCCCGGAGTTTGCGTT
GCTGTCGATTCCGGCGGCGCTGATGCTCGGCCTGCTGCTCGGCCTGTTCAACGGCGCGCTGGTCGCCTTCGCCGGGCTAC
CGCCGTTTATCGTCACCCTCGGCACCTACACGGCGCTGCGCGGCGCCGCCTATCTGCTGGCCGACGGCACCACGGTGATC
AACTCCGATATCAGCTTCGAGTGGATCGGCAATGACTACCTCGGCCCGGTGCCGTGGCTGGTAGTCATCGCCCTGGCGGT
GATCGCGGTGTGCTGGTTTATCCTGCGCCGCACCACCCTTGGGGTGCATATCTACGCGGTGGGCGGCAACATGCAGGCGG
CGCGGCTGACCGGCATCAAAGTCTGGCTGGTGCTGCTGTTTGTCTATGGCATGAGCGGCCTGCTCTCCGGCCTTGGCGGG
GTGATGAGCGCTTCGCGGCTGTACAGTGCCAACGGCAACCTCGGCGTCGGCTACGAGCTGGACGCCATCGCCGCGGTCAT
TCTCGGCGGCACCAGCTTCGTCGGCGGTATCGGCACCATCACCGGTACGCTGGTGGGGGCGCTAATTATCGCCACCCTCA
ATAACGGCATGACCCTGATGGGGGTCTCCTACTTCTGGCAACTGGTGATCAAAGGGGCGGTGATCATCATTGCGGTGCTG
ATCGACAAATACCGTACCCGACATCATCAAAGTGCATAA

Upstream 100 bases:

>100_bases
GCGTTATCGCCGGCGAGCTACAGGCCGGTGATATTAGCCAGGAAAGTATCATGACGCTGGCCACCGGCGTGACCGATTCT
CACCTTAAGGCAGGGCAACT

Downstream 100 bases:

>100_bases
CAACAACATCTTACCTGCGAGGAAAAGCGAATGCGTTTAAAACCGATAGTCACCGCGCTGTGTGCTGGCGCGCTGCTGGC
CGCCTCCCCTTTTGCGTCGG

Product: putative ribose ABC transport system permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSIPKENSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGG
IDLSVGSILGTTAVAAMVVSLIPEFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI
NSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG
VMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVL
IDKYRTRHHQSA

Sequences:

>Translated_332_residues
MSIPKENSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGG
IDLSVGSILGTTAVAAMVVSLIPEFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVI
NSDISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG
VMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVL
IDKYRTRHHQSA
>Mature_331_residues
SIPKENSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGI
DLSVGSILGTTAVAAMVVSLIPEFALLSIPAALMLGLLLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVIN
SDISFEWIGNDYLGPVPWLVVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGV
MSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI
DKYRTRHHQSA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=46.2540716612378, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1790524, Length=326, Percent_Identity=38.6503067484663, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788896, Length=339, Percent_Identity=34.5132743362832, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=35.8552631578947, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=34.402332361516, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1788471, Length=336, Percent_Identity=36.0119047619048, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87082395, Length=324, Percent_Identity=33.0246913580247, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=38.8, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787793, Length=293, Percent_Identity=32.7645051194539, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787794, Length=308, Percent_Identity=32.1428571428571, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34618; Mature: 34487

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPKENSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFALLSIPAALMLGLLL
HCCEEEEEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNDYLGPVPWL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEECCCCCCCHHHHH
VVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLM
HHHHHHHEECCCCCCCCCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHH
GVSYFWQLVIKGAVIIIAVLIDKYRTRHHQSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIPKENSAPVAKSASAKKMLMGDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFALLSIPAALMLGLLL
HCCEEEEEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDISFEWIGNDYLGPVPWL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEECCCCCCCHHHHH
VVIALAVIAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGG
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLM
HHHHHHHEECCCCCCCCCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHH
GVSYFWQLVIKGAVIIIAVLIDKYRTRHHQSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]