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The map label for this gene is rbsB [H]

Identifier: 238892574

GI number: 238892574

Start: 360994

End: 361935

Strand: Reverse

Name: rbsB [H]

Synonym: KP1_0351

Alternate gene names: 238892574

Gene position: 361935-360994 (Counterclockwise)

Preceding gene: 238892575

Following gene: 238892573

Centisome position: 6.9

GC content: 61.04

Gene sequence:

>942_bases
ATGCGTTTAAAACCGATAGTCACCGCGCTGTGTGCTGGCGCGCTGCTGGCCGCCTCCCCTTTTGCGTCGGCCAAAGAGCT
GAAAGCGATTGGCGTGACGGTGGGCGACCTTGCCAACCCGTTCTTTGTGCAGATCACCAAAGGGGCGGAGCTGGAGGCCC
GCAAACTGGCGGGGGATAACGTCAAAGTGACGCTGGTCTCCAGCGGCTACGATCTGGGCCAGCAGGTGGCGCAGATCGAT
AACTTTATCGCCGCCAAAGTCGATATGATCATCCTCAACGCCGCCGATTCGAAAGGCATTGGCCCGGCGGTGAAGCGGGC
CAAAGAGGCCGGGATCGTGGTGGTGGCGGTTGACGTCGCCGCCGAAGGGGCCGACGCCACCATCACCTCCGATAACACCC
AGGCGGGCGAGCTGGCCTGTAAATACATTAGCGACCGCCTGAACAACAAAGGCAACGTGGTGATCATCAACGGGCCGCCG
GTCTCCGCCGTACAAAACCGCGTCGAAGGCTGCGAAACGGAGTTCAAAAAACACCCGGACATTAAAATCCTCTCCGCCAA
CCAGAACGCCAAAGGCAGCCGGGAAGGCGGCCTGGAGGTGATGACCTCCCTGCTGGCGGCCAATCCGAAGATTGACGGCG
TGTTCGCGATCAACGATCCGACGGCGATTGGTGCCGATCTGGCAGCGAAACAGGCGCAGCGCAGCGAGTTCTTCATCGTC
GGCGTCGACGGCAGCCCGGACGGCGAAGAGGCGCTGAAGCGTAAGAACTCGCTGTTCGTCGCCACCCCAGCGCAGGACCC
ACAGGTGATGGCGGCGAAGGCGGTGGAGATTGGCTACGACATCCTGCAGGGCAAACCGGCGCCGACCGCGCCGGTACTGA
TCCCGGTGACGATGATCGACAAAAATAACGTCAGCTCTTACAAAGGCTGGACCGTGAAATAA

Upstream 100 bases:

>100_bases
CAAAGGGGCGGTGATCATCATTGCGGTGCTGATCGACAAATACCGTACCCGACATCATCAAAGTGCATAACAACAACATC
TTACCTGCGAGGAAAAGCGA

Downstream 100 bases:

>100_bases
GCGCAACCAGGCGCACAATCGTTCCGCCGATTGTGCGCTACGCTTAACGAATATGACGGCGCGGAGTAGCGATCATGGAA
CGGAAAGGCATTATTGCCGC

Product: putative ribose ABC transport system periplasmic ribose-binding component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRLKPIVTALCAGALLAASPFASAKELKAIGVTVGDLANPFFVQITKGAELEARKLAGDNVKVTLVSSGYDLGQQVAQID
NFIAAKVDMIILNAADSKGIGPAVKRAKEAGIVVVAVDVAAEGADATITSDNTQAGELACKYISDRLNNKGNVVIINGPP
VSAVQNRVEGCETEFKKHPDIKILSANQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV
GVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPTAPVLIPVTMIDKNNVSSYKGWTVK

Sequences:

>Translated_313_residues
MRLKPIVTALCAGALLAASPFASAKELKAIGVTVGDLANPFFVQITKGAELEARKLAGDNVKVTLVSSGYDLGQQVAQID
NFIAAKVDMIILNAADSKGIGPAVKRAKEAGIVVVAVDVAAEGADATITSDNTQAGELACKYISDRLNNKGNVVIINGPP
VSAVQNRVEGCETEFKKHPDIKILSANQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV
GVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPTAPVLIPVTMIDKNNVSSYKGWTVK
>Mature_313_residues
MRLKPIVTALCAGALLAASPFASAKELKAIGVTVGDLANPFFVQITKGAELEARKLAGDNVKVTLVSSGYDLGQQVAQID
NFIAAKVDMIILNAADSKGIGPAVKRAKEAGIVVVAVDVAAEGADATITSDNTQAGELACKYISDRLNNKGNVVIINGPP
VSAVQNRVEGCETEFKKHPDIKILSANQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV
GVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPTAPVLIPVTMIDKNNVSSYKGWTVK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=288, Percent_Identity=34.0277777777778, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790526, Length=280, Percent_Identity=29.6428571428571, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790715, Length=291, Percent_Identity=26.1168384879725, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790674, Length=191, Percent_Identity=31.413612565445, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789990, Length=211, Percent_Identity=31.2796208530806, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32620; Mature: 32620

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKPIVTALCAGALLAASPFASAKELKAIGVTVGDLANPFFVQITKGAELEARKLAGDN
CCCHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEHHHCCCCEEEEEECCCCCCHHHHCCCC
VKVTLVSSGYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKEAGIVVVAVDVA
EEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEE
AEGADATITSDNTQAGELACKYISDRLNNKGNVVIINGPPVSAVQNRVEGCETEFKKHPD
CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
IKILSANQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV
EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEE
GVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPTAPVLIPVTMID
EECCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE
KNNVSSYKGWTVK
CCCCCCCCCCCCC
>Mature Secondary Structure
MRLKPIVTALCAGALLAASPFASAKELKAIGVTVGDLANPFFVQITKGAELEARKLAGDN
CCCHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEHHHCCCCEEEEEECCCCCCHHHHCCCC
VKVTLVSSGYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKEAGIVVVAVDVA
EEEEEEECCCHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEE
AEGADATITSDNTQAGELACKYISDRLNNKGNVVIINGPPVSAVQNRVEGCETEFKKHPD
CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
IKILSANQNAKGSREGGLEVMTSLLAANPKIDGVFAINDPTAIGADLAAKQAQRSEFFIV
EEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEE
GVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPTAPVLIPVTMID
EECCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE
KNNVSSYKGWTVK
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]