| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is btuB [H]
Identifier: 238028360
GI number: 238028360
Start: 3201349
End: 3203283
Strand: Reverse
Name: btuB [H]
Synonym: bglu_1g28210
Alternate gene names: 238028360
Gene position: 3203283-3201349 (Counterclockwise)
Preceding gene: 238028365
Following gene: 238028359
Centisome position: 82.0
GC content: 70.13
Gene sequence:
>1935_bases ATGCGCACCGCTTTGGTTCGCGCCACGCTCGCCGCGCTATGCGGCCTGCCCGGCTTCGCCCGGGCGCAGTCCGCCGCATC CGCGCCGCCCCCGTCTGTCTCCACTTCCGCGCCGGCTGCCGGGGCGAGCCGGGCGCCCGCCGCCACGGCCGCGGCCGGCG CCGTCGAGCCGGCCGTCCTCGATTCCGTCGTCGTGACCGCGAGCCGCAGCCCGCAGACGCTCGCCGACGCGCTGCCGCAG ACCACGCTGTTTACGCGCGAGGACATCGACCACGGCAGCGCCACCGATCTGCCCGGGCTGCTCGCGCTCGCGCCCGGCGC GCAGATCGTGCGCAACGGCGGCCCCGGTTCCACCGCCACGCTGTTTTTGCGCGGCGCGCAGTCCACCCAGTCGCTGGTGC TGATCGACGGCGTGCGCGTCGATTCCGCCAGCCTCGGCGCCGCGCAGCTCAGCCAGCTGCCGCTCGCGCAGATCGATCAC GTCGAGGTGGTCAACGGCAACGTCTCGTCGCTGTACGGCTCGGGTGCGATCGGCGGCGTGGTGCAGGTGTTTACGCGCGA CGGCGGCAATCATCCGCCGCGCTTCTGGTTCTCGGCCGGCTATGGCAGCTACCACACGCAGTCGCAGGACGCGGGCGTGT CGGGCCGGCTCGATGGCGACGGCCGCAGCACCTTTTCGCTCGCGCTCTCGCGCGAGAAGACCGACGGCTTTTCCGCGCTG AACCCCGCGCAGCAGCCGCGCGCCAATCCGAATGCGAACGGCAACCTCGGCGAGAGTGTCTCGGCCGCGCTCAAGCACCG CTTCGCGAACGGCTGGAGCGCCGGGCTCACCTACTTCCAGTCGAACGGCGCGAACAGCTACGACAATGCGTTCGGCCTGC CCACCGACCTCAACACGCTCTACAGCCGCGTGCAGCAGCTATCGGTGTTCGCCGACGGCAGGCTGGCCGACGGCTGGACC ACGCATCTGCGCGTCTCGACCGGCAACGACCGCAGCCAGTCCTGGCTCAACGGCGCCTATACCGACCACTTCGATACCGA CAACCGCCAGTACACCTGGCAAAACGATTTCCGGCTCGCGCGCGGCCAGACCGTCCAGGCCGGCTACGAGCGGCTCGACC AGGCACTCGATTCGAACGAGTACGCGGCGCCGCGGCGCCATGTGAACTCTGGCTGGCTCGGCTACACGGGCCGCTTCGGC AACAACCGGTTCCAGGCCAACGTCCGGCGCGACGGGTATTCGGATTTCGGCGGCGCGAACAGCTACTATCTCGGCTACGG CCTGGACCTGGGCGAGCACTGGAAAGTCACGGCGAGCGTGTCGGACGCGTTTCGCGCGCCGACCTTCAACGACCTGTACT TCCCGGGCGCGAGCAACCCCGCGATCCAGCCGGAGCGCAGCCATTCGGTGGAGGCGGCGCTGCAGTACGCCTCGGACGCG CTCGGCGTGATGCGCCTGAGCCTGTTCCAGACGCGCTACACCAACCTGATCCAGTACGTGCCGGACGCCACCGGCTTCGT CTACACCGCGCAGAACGTCGGGCGCGCCAAGGTGCAGGGCATCGAGGGCGCGTGGCAGGGGCAGCTCGGCAAGACCGACC TGCGCGTGGCGGCGACCCTGCAGAACCCTGTCGACGAGAGCGCGAACCAGGATCTGGTGCGCCGCGCGCGGCACTTCGCG TCGTTCTCGGCAAACCGCGCGTTCGGCGGCTGGCGCGTGGGCGGCGAATGGCTCGTGAGCGGCGCGCGCGACGACAGCGG CGAGCCGCTCGGCGGCTACGGCATCGTGAACCTGACGGCGCGCTACGACATCACGAAATCGTGGTACGTGAGCGCGCACC TCGACAACCTGCTCGACAAGGACTATCAGCTTGCGTATGGGTACAACACGCCGCGCCGCGGCGCCTACGTCACGATCGGC TGGCGGCAGCCGTAG
Upstream 100 bases:
>100_bases ACCGGCCGGAGTGGGGAAGCGTGTCGCCCGCGTGCGCCGCTTCCGTGAGGCGGAACCTGCGGGGAAGCGGGGGCCGCGCT TGTCGACAGGATGTTTTCCG
Downstream 100 bases:
>100_bases GGCGTCGATCATGCCGCGCGCGCCGCGCGCCGCATGCGGGGGGCGCGGTTGCGCGGCGCCGCGATGACGCCCGGCCGGGC CGCGGCGATCTGGGCCGCGC
Product: putative TonB-dependent vitamin B12 receptor BtuB
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MRTALVRATLAALCGLPGFARAQSAASAPPPSVSTSAPAAGASRAPAATAAAGAVEPAVLDSVVVTASRSPQTLADALPQ TTLFTREDIDHGSATDLPGLLALAPGAQIVRNGGPGSTATLFLRGAQSTQSLVLIDGVRVDSASLGAAQLSQLPLAQIDH VEVVNGNVSSLYGSGAIGGVVQVFTRDGGNHPPRFWFSAGYGSYHTQSQDAGVSGRLDGDGRSTFSLALSREKTDGFSAL NPAQQPRANPNANGNLGESVSAALKHRFANGWSAGLTYFQSNGANSYDNAFGLPTDLNTLYSRVQQLSVFADGRLADGWT THLRVSTGNDRSQSWLNGAYTDHFDTDNRQYTWQNDFRLARGQTVQAGYERLDQALDSNEYAAPRRHVNSGWLGYTGRFG NNRFQANVRRDGYSDFGGANSYYLGYGLDLGEHWKVTASVSDAFRAPTFNDLYFPGASNPAIQPERSHSVEAALQYASDA LGVMRLSLFQTRYTNLIQYVPDATGFVYTAQNVGRAKVQGIEGAWQGQLGKTDLRVAATLQNPVDESANQDLVRRARHFA SFSANRAFGGWRVGGEWLVSGARDDSGEPLGGYGIVNLTARYDITKSWYVSAHLDNLLDKDYQLAYGYNTPRRGAYVTIG WRQP
Sequences:
>Translated_644_residues MRTALVRATLAALCGLPGFARAQSAASAPPPSVSTSAPAAGASRAPAATAAAGAVEPAVLDSVVVTASRSPQTLADALPQ TTLFTREDIDHGSATDLPGLLALAPGAQIVRNGGPGSTATLFLRGAQSTQSLVLIDGVRVDSASLGAAQLSQLPLAQIDH VEVVNGNVSSLYGSGAIGGVVQVFTRDGGNHPPRFWFSAGYGSYHTQSQDAGVSGRLDGDGRSTFSLALSREKTDGFSAL NPAQQPRANPNANGNLGESVSAALKHRFANGWSAGLTYFQSNGANSYDNAFGLPTDLNTLYSRVQQLSVFADGRLADGWT THLRVSTGNDRSQSWLNGAYTDHFDTDNRQYTWQNDFRLARGQTVQAGYERLDQALDSNEYAAPRRHVNSGWLGYTGRFG NNRFQANVRRDGYSDFGGANSYYLGYGLDLGEHWKVTASVSDAFRAPTFNDLYFPGASNPAIQPERSHSVEAALQYASDA LGVMRLSLFQTRYTNLIQYVPDATGFVYTAQNVGRAKVQGIEGAWQGQLGKTDLRVAATLQNPVDESANQDLVRRARHFA SFSANRAFGGWRVGGEWLVSGARDDSGEPLGGYGIVNLTARYDITKSWYVSAHLDNLLDKDYQLAYGYNTPRRGAYVTIG WRQP >Mature_644_residues MRTALVRATLAALCGLPGFARAQSAASAPPPSVSTSAPAAGASRAPAATAAAGAVEPAVLDSVVVTASRSPQTLADALPQ TTLFTREDIDHGSATDLPGLLALAPGAQIVRNGGPGSTATLFLRGAQSTQSLVLIDGVRVDSASLGAAQLSQLPLAQIDH VEVVNGNVSSLYGSGAIGGVVQVFTRDGGNHPPRFWFSAGYGSYHTQSQDAGVSGRLDGDGRSTFSLALSREKTDGFSAL NPAQQPRANPNANGNLGESVSAALKHRFANGWSAGLTYFQSNGANSYDNAFGLPTDLNTLYSRVQQLSVFADGRLADGWT THLRVSTGNDRSQSWLNGAYTDHFDTDNRQYTWQNDFRLARGQTVQAGYERLDQALDSNEYAAPRRHVNSGWLGYTGRFG NNRFQANVRRDGYSDFGGANSYYLGYGLDLGEHWKVTASVSDAFRAPTFNDLYFPGASNPAIQPERSHSVEAALQYASDA LGVMRLSLFQTRYTNLIQYVPDATGFVYTAQNVGRAKVQGIEGAWQGQLGKTDLRVAATLQNPVDESANQDLVRRARHFA SFSANRAFGGWRVGGEWLVSGARDDSGEPLGGYGIVNLTARYDITKSWYVSAHLDNLLDKDYQLAYGYNTPRRGAYVTIG WRQP
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=622, Percent_Identity=28.4565916398714, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI1788478, Length=133, Percent_Identity=36.0902255639098, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 68905; Mature: 68905
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTALVRATLAALCGLPGFARAQSAASAPPPSVSTSAPAAGASRAPAATAAAGAVEPAVL CCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHH DSVVVTASRSPQTLADALPQTTLFTREDIDHGSATDLPGLLALAPGAQIVRNGGPGSTAT HHEEEECCCCCHHHHHHCCCCEEEEHHCCCCCCCCCCCCCEEECCCHHEEECCCCCCEEE LFLRGAQSTQSLVLIDGVRVDSASLGAAQLSQLPLAQIDHVEVVNGNVSSLYGSGAIGGV EEEECCCCCCEEEEEECEEECCCCCCHHHHHCCCCHHCCEEEEECCCHHHHCCCCCCCCE VQVFTRDGGNHPPRFWFSAGYGSYHTQSQDAGVSGRLDGDGRSTFSLALSREKTDGFSAL EEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCC NPAQQPRANPNANGNLGESVSAALKHRFANGWSAGLTYFQSNGANSYDNAFGLPTDLNTL CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHH YSRVQQLSVFADGRLADGWTTHLRVSTGNDRSQSWLNGAYTDHFDTDNRQYTWQNDFRLA HHHHHHHHHHCCCEECCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCEEEECCCEEEC RGQTVQAGYERLDQALDSNEYAAPRRHVNSGWLGYTGRFGNNRFQANVRRDGYSDFGGAN CCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC SYYLGYGLDLGEHWKVTASVSDAFRAPTFNDLYFPGASNPAIQPERSHSVEAALQYASDA CEEEEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHH LGVMRLSLFQTRYTNLIQYVPDATGFVYTAQNVGRAKVQGIEGAWQGQLGKTDLRVAATL HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEEEC QNPVDESANQDLVRRARHFASFSANRAFGGWRVGGEWLVSGARDDSGEPLGGYGIVNLTA CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCCCCCEEEEEEEE RYDITKSWYVSAHLDNLLDKDYQLAYGYNTPRRGAYVTIGWRQP EEECCCEEEEEEHHHHHHCCCEEEEECCCCCCCCEEEEEECCCC >Mature Secondary Structure MRTALVRATLAALCGLPGFARAQSAASAPPPSVSTSAPAAGASRAPAATAAAGAVEPAVL CCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHH DSVVVTASRSPQTLADALPQTTLFTREDIDHGSATDLPGLLALAPGAQIVRNGGPGSTAT HHEEEECCCCCHHHHHHCCCCEEEEHHCCCCCCCCCCCCCEEECCCHHEEECCCCCCEEE LFLRGAQSTQSLVLIDGVRVDSASLGAAQLSQLPLAQIDHVEVVNGNVSSLYGSGAIGGV EEEECCCCCCEEEEEECEEECCCCCCHHHHHCCCCHHCCEEEEECCCHHHHCCCCCCCCE VQVFTRDGGNHPPRFWFSAGYGSYHTQSQDAGVSGRLDGDGRSTFSLALSREKTDGFSAL EEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCC NPAQQPRANPNANGNLGESVSAALKHRFANGWSAGLTYFQSNGANSYDNAFGLPTDLNTL CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHH YSRVQQLSVFADGRLADGWTTHLRVSTGNDRSQSWLNGAYTDHFDTDNRQYTWQNDFRLA HHHHHHHHHHCCCEECCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCEEEECCCEEEC RGQTVQAGYERLDQALDSNEYAAPRRHVNSGWLGYTGRFGNNRFQANVRRDGYSDFGGAN CCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCC SYYLGYGLDLGEHWKVTASVSDAFRAPTFNDLYFPGASNPAIQPERSHSVEAALQYASDA CEEEEECCCCCCCEEEEEEHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHH LGVMRLSLFQTRYTNLIQYVPDATGFVYTAQNVGRAKVQGIEGAWQGQLGKTDLRVAATL HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCEEEEEEC QNPVDESANQDLVRRARHFASFSANRAFGGWRVGGEWLVSGARDDSGEPLGGYGIVNLTA CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCCCCCEEEEEEEE RYDITKSWYVSAHLDNLLDKDYQLAYGYNTPRRGAYVTIGWRQP EEECCCEEEEEEHHHHHHCCCEEEEECCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA