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The map label for this gene is cobD [H]

Identifier: 238028353

GI number: 238028353

Start: 3193572

End: 3194516

Strand: Direct

Name: cobD [H]

Synonym: bglu_1g28140

Alternate gene names: 238028353

Gene position: 3193572-3194516 (Clockwise)

Preceding gene: 238028352

Following gene: 339905976

Centisome position: 81.75

GC content: 76.4

Gene sequence:

>945_bases
ATGCTGATGCTGTCGCTGCCCGCCGTCGCGATCCTCGCGGTCGCCGCGTTCCTCGTTGACTGGCGGTTCGGCGAGCCGCG
CCGCGCCCATCCGCTGGTCGGCTTCGGCAGGCTCGCCGCCCGACTCGAGGCGCGCCTGAACACCGGCGCGCGGGGCCGGC
TGGCGGGGGTCAGCGCCTGGTGCCTGGCGGTCGTGCCGCCCGTCGCGCTGGCGGCGCTCTGCATCGCGCTGCTGCCCTGG
CCGCTCGCGCTCGCGCTGCATGTCGCGCTGCTCTGGTTCGCGCTCGGCGCGCGCAGCCTCGCCGAACACATCGCGCCGAT
CGGCGCGGCGCTGGTGCGCGGCGACCTCGCCGACGCCCGCGTGCTGACCGCGCGGATCGTCTCGCGCGATACGCGCGAGG
CCGATATGTCGGCGCTGTCGCGCGCGGCCGTCGAATCGGCGCTCGAGAACGGCAACGACGCGATCTTCGGCGCCCTGTTC
TGGTTCGCCGTGGCGGGCGGGCCCGGCGCGCTGATGTTCCGGCTCGCCAACACGCTCGACGCGATGTGGGGCTACCGCAC
GCCGCGCCTGCTGCGCTTCGGCTGGGCCGCCGCGCGCATCGACGACGCGCTGAACTGGGTGCCCGCGCGGCTCACCGCCG
CCAGCTATGCGCTGCTCGGCGACACCGCGAGCGCCTGGCGCTGCTGGCGCACCCAGGCGCGCCACTGGGACAGCCCGAAC
GCCGGGCCGGTGATGGCCGCCGGCGCGGGTAGCCTCAACGTCGTGCTCGGCGGCCCGGCCGTCTACCACGGCGAGCTCGA
AGCGCGGCCGACGCTCGGCGCCGGCCGCCCGGCCGCGCCCGAACACGTGCGCGCCGCGCTGTCGCTGGTCGCGCGCACCT
CGATCCTGTGGCTCGCGCTGCTGCTCGCCTGCGCGGCGCTCGCGGTGGCGACGCATCATGGCTGA

Upstream 100 bases:

>100_bases
TCGCCGCGCTGGCCACGCGCGTGACCCTGGTCGTGGCCGGCCTGCCGCTCGCCCTCAAGGGCGCGCCGGCGGCCGCCGCT
GCCGCGCAGGCGGCCCCGCG

Downstream 100 bases:

>100_bases
CGCCCGCCGCGCGCGCCGGCCGCGGCGGGCGGCGCGGCGCGGGCCGCTCTGCGCGAGGCGCGCCGCGCCGTCACGGGCAC
GCGCTCCGGCATCCGGCGGC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLMLSLPAVAILAVAAFLVDWRFGEPRRAHPLVGFGRLAARLEARLNTGARGRLAGVSAWCLAVVPPVALAALCIALLPW
PLALALHVALLWFALGARSLAEHIAPIGAALVRGDLADARVLTARIVSRDTREADMSALSRAAVESALENGNDAIFGALF
WFAVAGGPGALMFRLANTLDAMWGYRTPRLLRFGWAAARIDDALNWVPARLTAASYALLGDTASAWRCWRTQARHWDSPN
AGPVMAAGAGSLNVVLGGPAVYHGELEARPTLGAGRPAAPEHVRAALSLVARTSILWLALLLACAALAVATHHG

Sequences:

>Translated_314_residues
MLMLSLPAVAILAVAAFLVDWRFGEPRRAHPLVGFGRLAARLEARLNTGARGRLAGVSAWCLAVVPPVALAALCIALLPW
PLALALHVALLWFALGARSLAEHIAPIGAALVRGDLADARVLTARIVSRDTREADMSALSRAAVESALENGNDAIFGALF
WFAVAGGPGALMFRLANTLDAMWGYRTPRLLRFGWAAARIDDALNWVPARLTAASYALLGDTASAWRCWRTQARHWDSPN
AGPVMAAGAGSLNVVLGGPAVYHGELEARPTLGAGRPAAPEHVRAALSLVARTSILWLALLLACAALAVATHHG
>Mature_314_residues
MLMLSLPAVAILAVAAFLVDWRFGEPRRAHPLVGFGRLAARLEARLNTGARGRLAGVSAWCLAVVPPVALAALCIALLPW
PLALALHVALLWFALGARSLAEHIAPIGAALVRGDLADARVLTARIVSRDTREADMSALSRAAVESALENGNDAIFGALF
WFAVAGGPGALMFRLANTLDAMWGYRTPRLLRFGWAAARIDDALNWVPARLTAASYALLGDTASAWRCWRTQARHWDSPN
AGPVMAAGAGSLNVVLGGPAVYHGELEARPTLGAGRPAAPEHVRAALSLVARTSILWLALLLACAALAVATHHG

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 33077; Mature: 33077

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLSLPAVAILAVAAFLVDWRFGEPRRAHPLVGFGRLAARLEARLNTGARGRLAGVSAW
CEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
CLAVVPPVALAALCIALLPWPLALALHVALLWFALGARSLAEHIAPIGAALVRGDLADAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VLTARIVSRDTREADMSALSRAAVESALENGNDAIFGALFWFAVAGGPGALMFRLANTLD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRLLRFGWAAARIDDALNWVPARLTAASYALLGDTASAWRCWRTQARHWDSPN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
AGPVMAAGAGSLNVVLGGPAVYHGELEARPTLGAGRPAAPEHVRAALSLVARTSILWLAL
CCCEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLACAALAVATHHG
HHHHHHHHHHHCCC
>Mature Secondary Structure
MLMLSLPAVAILAVAAFLVDWRFGEPRRAHPLVGFGRLAARLEARLNTGARGRLAGVSAW
CEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
CLAVVPPVALAALCIALLPWPLALALHVALLWFALGARSLAEHIAPIGAALVRGDLADAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VLTARIVSRDTREADMSALSRAAVESALENGNDAIFGALFWFAVAGGPGALMFRLANTLD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRLLRFGWAAARIDDALNWVPARLTAASYALLGDTASAWRCWRTQARHWDSPN
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
AGPVMAAGAGSLNVVLGGPAVYHGELEARPTLGAGRPAAPEHVRAALSLVARTSILWLAL
CCCEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLACAALAVATHHG
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA