Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238028339
Identifier: 238028339
GI number: 238028339
Start: 3175560
End: 3176087
Strand: Reverse
Name: 238028339
Synonym: bglu_1g28000
Alternate gene names: NA
Gene position: 3176087-3175560 (Counterclockwise)
Preceding gene: 238028340
Following gene: 238028338
Centisome position: 81.3
GC content: 73.48
Gene sequence:
>528_bases ATGAAACAACGATTCGAGCGGACGGCCTGCCTCAGCGCCGGTGCCGTCCTGGCCGCCATGGTCCTGCTCAACGGCTGCAC GTCGTTCGCGTCCACGCACGAGAAACGCGCCGACGCGCTGCTGCAGCCCACCTTCGGCAGCCAGGCGCGCGGCACGCTGA CGTTCGTCGAGCGTCCCGACGGCGTGCAGGTCACCTACAACATCGCCGGGCTGCCGCCGAACACCGATCACGCGCTGCAG GTGCACGACCGCGGCGACTGCAACGCGGTGGACGGCGCGAGCGCGGGCCCCGTGTTCGCGCCCAGCGCCGACCGCCTGCG CGCCGGCGCGCGCGTGGCGGGCGATCTCGGCAACATCCACGCCGATTCGAACGGCGTGGCCGCCGGCTTCATCGTCGCGC CCGACGTGGCCCTCGACGGGGTGCGCTCGGTGCTCGGCCGCTCGGTGCTGATCCACCGCGATGCCGGCGATCCCGCCTTC CCGCAGCACAGCGCCGGCCCGGGCCTCGCCTGTGGCGTGGTGCGCTGA
Upstream 100 bases:
>100_bases GCGCGGCGAGCCGCGGTATCATGGCGACTTTTCCCCTGGTCCCCTTTCCTGTCGGCCAGCGGGGCTGCCGGTGCGGCAGG CCCGTTGGCGTGAGGATCGC
Downstream 100 bases:
>100_bases GGATGCGGCGGCGCGTGCCGGCCGCGATCGCGTAAAATGTGCGCCTTTCCCCGCCGCCCGGTGCGACCGGCGGCGCGACC CCGATCTGTAGCGTTATCTG
Product: Superoxide dismutase, Cu-Zn
Products: NA
Alternate protein names: Copper/Zinc Superoxide Dismutase; Cu/Zn Superoxide Dismutase; Superoxide Dismutase Cu-Zn; Exported Superoxide Dismutase; Superoxide Dismutase Like Protein; Copper-Zinc Superoxide Dismutase; Superoxide Dismutase Secreted; Superoxide Dismutase Cu/Zn
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKQRFERTACLSAGAVLAAMVLLNGCTSFASTHEKRADALLQPTFGSQARGTLTFVERPDGVQVTYNIAGLPPNTDHALQ VHDRGDCNAVDGASAGPVFAPSADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDVALDGVRSVLGRSVLIHRDAGDPAF PQHSAGPGLACGVVR
Sequences:
>Translated_175_residues MKQRFERTACLSAGAVLAAMVLLNGCTSFASTHEKRADALLQPTFGSQARGTLTFVERPDGVQVTYNIAGLPPNTDHALQ VHDRGDCNAVDGASAGPVFAPSADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDVALDGVRSVLGRSVLIHRDAGDPAF PQHSAGPGLACGVVR >Mature_175_residues MKQRFERTACLSAGAVLAAMVLLNGCTSFASTHEKRADALLQPTFGSQARGTLTFVERPDGVQVTYNIAGLPPNTDHALQ VHDRGDCNAVDGASAGPVFAPSADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDVALDGVRSVLGRSVLIHRDAGDPAF PQHSAGPGLACGVVR
Specific function: Unknown
COG id: COG2032
COG function: function code P; Cu/Zn superoxide dismutase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322564, Length=122, Percent_Identity=39.344262295082, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17950; Mature: 17950
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQRFERTACLSAGAVLAAMVLLNGCTSFASTHEKRADALLQPTFGSQARGTLTFVERPD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC GVQVTYNIAGLPPNTDHALQVHDRGDCNAVDGASAGPVFAPSADRLRAGARVAGDLGNIH CEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCHHHHHCCCEEECCCCCEE ADSNGVAAGFIVAPDVALDGVRSVLGRSVLIHRDAGDPAFPQHSAGPGLACGVVR ECCCCCEEEEEEECCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEECCCC >Mature Secondary Structure MKQRFERTACLSAGAVLAAMVLLNGCTSFASTHEKRADALLQPTFGSQARGTLTFVERPD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC GVQVTYNIAGLPPNTDHALQVHDRGDCNAVDGASAGPVFAPSADRLRAGARVAGDLGNIH CEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEECCCHHHHHCCCEEECCCCCEE ADSNGVAAGFIVAPDVALDGVRSVLGRSVLIHRDAGDPAFPQHSAGPGLACGVVR ECCCCCEEEEEEECCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA