| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yebQ [H]
Identifier: 238028304
GI number: 238028304
Start: 3134033
End: 3135403
Strand: Direct
Name: yebQ [H]
Synonym: bglu_1g27650
Alternate gene names: 238028304
Gene position: 3134033-3135403 (Clockwise)
Preceding gene: 238028303
Following gene: 238028308
Centisome position: 80.23
GC content: 71.48
Gene sequence:
>1371_bases ATGAACGCCGACGACAACGGCCTGCCGCTTCCCGAACGCTACTGGGCCATCCTCTGCGTCGCGCTCGGCGTGCTGCTTGC CGTGCTCGACAGCGCGATCGCGAACGTCGCGCTGCCGACCATCGCGCGCGACCTGCACGCCACCGACGCCGCCTCGATCT GGGTCGTCAACGCCTATCAGCTCACCATCACGATCTCGCTGCTGCCGCTGGCTGCGCTGGGCGACCGAATCGGCTACCGG CGCGTCTATGTCGCCGGGCTCGCGCTGTTCACGGTTTCGTCGCTGGGCTGCGCGCTGGCCGATTCGCTCGCCTCGCTCGC GGCGATGCGCGTGGTCCAGGGCTTCGGCGCGGCCGGCATCATGAGCGTCAACACCGCGCTGGTGCGGATGATCTACCCGC CGCGCCTGCTCGGGCGGGGCGTCTCGCTCAACGCGATGGTGGTGGCGCTCGCCTCGGCGATCGGGCCGACCATCGCGTCG GCCGTGCTCGCGGTCACGACCTGGCCGTGGCTGTTCGCGATCAACGTGCCGATCGGCATCGCGGCCGTCGCGGTCGGCCT GCGCGCGCTGCCGGTCACGCGCGGCGACGACGCGCCGTACGACTATCCGAGCGCGATCCTGAACGCCTGCGTGTTCGGCC TCGTGATCCTCACCGTCGACGGCTTCGGCCACGGCGGCAACCACGGCCTCGTCGCGGCCGGTGCGATCGGCGCGGTGGTG CTCGGCTACGTGTTCGTGCGCCGGCAACTGTCGCAGCCCGCGCCGCTGCTGCCCGTCGACCTGCTGCGAATCCCGTTGTT TGCGCTGTCGATCGGCACCTCGGTGGCCTCGTTCACCTCGCAGATGCTCACCTTCGTCGCCTTGCCGTTCTGGCTGCAGC ACACGCTCGGGCTATCGCAGGTCGAGACCGGGCTCTACATGACGCCATGGCCGCTCGTGATCATGGTGGCCGCGCCGCTC GCGGGCGTTCTTTCGGACCGCTACTCCGCGGGCACGCTGGGCGGCATCGGCCTGGCGCTGTTCGCCGCGGGGCTGCTCGC GCTCGCCACGCTCGGCGCGCACCCGGCCCCTTTCGACATCATCTGGCGCATGGCGCTGTGCGGGGCCGGCTTCGGGCTGT TCCAATCGCCCAACAATCGCGCGATCCTGTCGTCGGCGCCGCGCCACCGCAGCGGCGGCGCGAGCGGCATGCTCGGCACG GCACGGCTCAGCGGACAGACGCTCGGCGCCGCGCTGGTCGCGCTGATCTTCAACGTGGCGCCCACGCACGGGCCGACCCT TGCCTTGTACGTCGCCACCGCGTTCGCGGCGCTCGCCGCCTGCGTGAGCCTGCTGCGAATCGGTGCAGGCGCCGCGGACG CCGGATCCTGA
Upstream 100 bases:
>100_bases CAGGGCTGGCGCGCCGACGCGGCCGCCTGCGGTCGCGGTCGCACCGATCGGCCGGCGCCCATGCGCCGGCCCACCGCCCG TATCGCTCCGCCCCCCGACC
Downstream 100 bases:
>100_bases GCCTTCCGGGCCGACGGCTCAGCGCGCGTGCGCCGAGCCGTCGGCGGCGAGCGTGTCGAGCACGAACCGGCAGCGCGCCT CGACCGCCACGCAAGGCAGT
Product: EmrB/QacA subfamily drug resistance transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MNADDNGLPLPERYWAILCVALGVLLAVLDSAIANVALPTIARDLHATDAASIWVVNAYQLTITISLLPLAALGDRIGYR RVYVAGLALFTVSSLGCALADSLASLAAMRVVQGFGAAGIMSVNTALVRMIYPPRLLGRGVSLNAMVVALASAIGPTIAS AVLAVTTWPWLFAINVPIGIAAVAVGLRALPVTRGDDAPYDYPSAILNACVFGLVILTVDGFGHGGNHGLVAAGAIGAVV LGYVFVRRQLSQPAPLLPVDLLRIPLFALSIGTSVASFTSQMLTFVALPFWLQHTLGLSQVETGLYMTPWPLVIMVAAPL AGVLSDRYSAGTLGGIGLALFAAGLLALATLGAHPAPFDIIWRMALCGAGFGLFQSPNNRAILSSAPRHRSGGASGMLGT ARLSGQTLGAALVALIFNVAPTHGPTLALYVATAFAALAACVSLLRIGAGAADAGS
Sequences:
>Translated_456_residues MNADDNGLPLPERYWAILCVALGVLLAVLDSAIANVALPTIARDLHATDAASIWVVNAYQLTITISLLPLAALGDRIGYR RVYVAGLALFTVSSLGCALADSLASLAAMRVVQGFGAAGIMSVNTALVRMIYPPRLLGRGVSLNAMVVALASAIGPTIAS AVLAVTTWPWLFAINVPIGIAAVAVGLRALPVTRGDDAPYDYPSAILNACVFGLVILTVDGFGHGGNHGLVAAGAIGAVV LGYVFVRRQLSQPAPLLPVDLLRIPLFALSIGTSVASFTSQMLTFVALPFWLQHTLGLSQVETGLYMTPWPLVIMVAAPL AGVLSDRYSAGTLGGIGLALFAAGLLALATLGAHPAPFDIIWRMALCGAGFGLFQSPNNRAILSSAPRHRSGGASGMLGT ARLSGQTLGAALVALIFNVAPTHGPTLALYVATAFAALAACVSLLRIGAGAADAGS >Mature_456_residues MNADDNGLPLPERYWAILCVALGVLLAVLDSAIANVALPTIARDLHATDAASIWVVNAYQLTITISLLPLAALGDRIGYR RVYVAGLALFTVSSLGCALADSLASLAAMRVVQGFGAAGIMSVNTALVRMIYPPRLLGRGVSLNAMVVALASAIGPTIAS AVLAVTTWPWLFAINVPIGIAAVAVGLRALPVTRGDDAPYDYPSAILNACVFGLVILTVDGFGHGGNHGLVAAGAIGAVV LGYVFVRRQLSQPAPLLPVDLLRIPLFALSIGTSVASFTSQMLTFVALPFWLQHTLGLSQVETGLYMTPWPLVIMVAAPL AGVLSDRYSAGTLGGIGLALFAAGLLALATLGAHPAPFDIIWRMALCGAGFGLFQSPNNRAILSSAPRHRSGGASGMLGT ARLSGQTLGAALVALIFNVAPTHGPTLALYVATAFAALAACVSLLRIGAGAADAGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=448, Percent_Identity=60.0446428571429, Blast_Score=506, Evalue=1e-145, Organism=Escherichia coli, GI1790195, Length=295, Percent_Identity=30.5084745762712, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1789042, Length=410, Percent_Identity=24.1463414634146, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1788392, Length=304, Percent_Identity=28.9473684210526, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1788710, Length=408, Percent_Identity=24.7549019607843, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1790146, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6325455, Length=174, Percent_Identity=32.183908045977, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46660; Mature: 46660
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNADDNGLPLPERYWAILCVALGVLLAVLDSAIANVALPTIARDLHATDAASIWVVNAYQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE LTITISLLPLAALGDRIGYRRVYVAGLALFTVSSLGCALADSLASLAAMRVVQGFGAAGI EEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MSVNTALVRMIYPPRLLGRGVSLNAMVVALASAIGPTIASAVLAVTTWPWLFAINVPIGI HHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH AAVAVGLRALPVTRGDDAPYDYPSAILNACVFGLVILTVDGFGHGGNHGLVAAGAIGAVV HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHH LGYVFVRRQLSQPAPLLPVDLLRIPLFALSIGTSVASFTSQMLTFVALPFWLQHTLGLSQ HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VETGLYMTPWPLVIMVAAPLAGVLSDRYSAGTLGGIGLALFAAGLLALATLGAHPAPFDI HCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH IWRMALCGAGFGLFQSPNNRAILSSAPRHRSGGASGMLGTARLSGQTLGAALVALIFNVA HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC PTHGPTLALYVATAFAALAACVSLLRIGAGAADAGS CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNADDNGLPLPERYWAILCVALGVLLAVLDSAIANVALPTIARDLHATDAASIWVVNAYQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE LTITISLLPLAALGDRIGYRRVYVAGLALFTVSSLGCALADSLASLAAMRVVQGFGAAGI EEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MSVNTALVRMIYPPRLLGRGVSLNAMVVALASAIGPTIASAVLAVTTWPWLFAINVPIGI HHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH AAVAVGLRALPVTRGDDAPYDYPSAILNACVFGLVILTVDGFGHGGNHGLVAAGAIGAVV HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCEEHHHHHHHHH LGYVFVRRQLSQPAPLLPVDLLRIPLFALSIGTSVASFTSQMLTFVALPFWLQHTLGLSQ HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH VETGLYMTPWPLVIMVAAPLAGVLSDRYSAGTLGGIGLALFAAGLLALATLGAHPAPFDI HCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH IWRMALCGAGFGLFQSPNNRAILSSAPRHRSGGASGMLGTARLSGQTLGAALVALIFNVA HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC PTHGPTLALYVATAFAALAACVSLLRIGAGAADAGS CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]