Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is nmoT [H]
Identifier: 238028243
GI number: 238028243
Start: 3075609
End: 3077114
Strand: Direct
Name: nmoT [H]
Synonym: bglu_1g26970
Alternate gene names: 238028243
Gene position: 3075609-3077114 (Clockwise)
Preceding gene: 238028242
Following gene: 238028244
Centisome position: 78.73
GC content: 64.67
Gene sequence:
>1506_bases GTGGGCATATTGGCCAAGATCAGGCGGATGTATTTCCGCGAGAAGGTCCCGCTGCGCGAGATTGCGCGGCGTACGGGCCT GTCCCGAAACACGGTGCGCCGCTGGCTGCGGCAGACTGATGCCGTCGAGCCGAAGTATCCGAAGCGCGTCAGCCCGAGCG TCATCGACGACTGGGCCGCACAGCTGACAGGTTGGCTGCGTGCCGACAGTCATCGCCCAAAGCGTGACCGGCGCACCGCC CGGTTCATGTTCGAGGCGATCCGCGCCGAGGGTTACGCCGGCAGTTATGGCCGCGTGAGCGCATTCGTGAGGCGTTGGCA CGAGGAGCAGGCTGAGGCGCCTCGCAGGAAGGCCTTCGTGCCGCTCGCCTTCGAACCCGGCGAAGCCTTCCAGTTTGACT GGAGCTGCGAATATGCGTTTGTTGGCGGGCTGCGGCGACGCTTGGAGGTCGCCCACGTCAAACTTAACTCCAGCCGGGCG TTCTGGCTGGTCGCCTATCCCACCCAGAGTCACGAGATGCTGTTCGACGCACACGCGCGCGCATTCGCCGCGTTCGGCGG CGTGCCCCGGCGCGGCATCTACGACAACATGAAGACCGCCGTGGACAAGGTCGGCCGCGGCAAGGAGCGCGCGGTCAACG CGCGCTTCGAAGCAATGTGCAGTCACTACCTGTTCGAGCCAGAGTTCTGCAACCGTGCCGCCGGCTGGGAGAAAGGCATC GTCGAGAAGAACGTTCAGGACCGGCGACGTCAGATCTGGCACGAAGCAGCGCTACGGCGCTGGGAAACGCTGGAGATCCT AAACGAATGGGTCGCTGGTCAGTGTCGTGAGGCCTGGCAGATGCGGCACCCGCAGTGGCCCGAGCTGACAGTCGAGGACG TGCTGCAGGACGAGCGCATCAGGCTGATGCCCAATCCACGGCCGTTCGACGGCTACATCGAGCAGACCCTGCGAGTCTCG TCGACCAGTCTGATTCACTTCCAGCGCAACCGCTACAGCGTGCCCACCGAGTACACGAACCAGTTGGTGAGCGTGCGCTG CTATCCGGCATATCTCAGCGTCGTCGCCAACGCCCAGGAGATCGCACGCCACGAACGCAGCTTCGAGCGGCACATGACCT TCTACGATTGGCGCCACTACGTCACGCTGGTCGAACGCAAACCCGGCGCACTGCGCAACGGCGCACCGTTCATCACGATG CCGCAGCCGCTGCAACTGCTGCAGCGGCATCTGCTGAAACACCCGGGCGGCGATCGCGTCATGACGCAGGTGCTCGCTGC GGTGCGCGAACACGGGCTCGATGCGGTGCTGCTCGCCGTACAGGCTGCGCTGGATTCAGGACGCCCCAGCGCAGAGCACG TTCTGAACGTGCTGAGCCGGTTGAAGGCACCCACCACGAGCACCAACCTCGCGACGACGAAACTCCAGCTTACCGAAGAG CCGGCCGCCGACGTGAGCCGCTACGAAACCCTGCGTGCCAACCCACCGGAGGACCGTCATGTCTAA
Upstream 100 bases:
>100_bases CAGAACTGACCCACTAGAGCTGAAAATTTTCATCGAATTTTGACCCACGTGATTGAATGCCCTGCTCAATCTTTGAGCAG GGGATACAAAGGTGATCACG
Downstream 100 bases:
>100_bases CGACATCGCCGCCCAGCTCAAGGGGCTCAAACTGCATGGCATGGCGAGCACGTGGCCGGAGCTGCTGGCGCAGTCGCGTC ACACGGAGTTCAACCCGGAG
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDRRTA RFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRA FWLVAYPTQSHEMLFDAHARAFAAFGGVPRRGIYDNMKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGWEKGI VEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQTLRVS STSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITM PQPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQLTEE PAADVSRYETLRANPPEDRHV
Sequences:
>Translated_501_residues MGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDRRTA RFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRA FWLVAYPTQSHEMLFDAHARAFAAFGGVPRRGIYDNMKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGWEKGI VEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQTLRVS STSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITM PQPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQLTEE PAADVSRYETLRANPPEDRHV >Mature_500_residues GILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDRRTAR FMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRAF WLVAYPTQSHEMLFDAHARAFAAFGGVPRRGIYDNMKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGWEKGIV EKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQTLRVSS TSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITMP QPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQLTEEP AADVSRYETLRANPPEDRHV
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG4584
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017894 - InterPro: IPR001584 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 58179; Mature: 58048
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAA CCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH QLTGWLRADSHRPKRDRRTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFV HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEE PLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRAFWLVAYPTQSHEMLFDAHAR EEEECCCCCEEECCCCCHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCHHHHHHHHH AFAAFGGVPRRGIYDNMKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGWEKGI HHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCH VEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCE RLMPNPRPFDGYIEQTLRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQE EECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHEEEEHHHHHHHHHHHHH IARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITMPQPLQLLQRHLLKHPGGDRV HHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHH MTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQLTEE HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCC PAADVSRYETLRANPPEDRHV CHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAA CHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH QLTGWLRADSHRPKRDRRTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFV HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHCEE PLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRAFWLVAYPTQSHEMLFDAHAR EEEECCCCCEEECCCCCHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCCCHHHHHHHHH AFAAFGGVPRRGIYDNMKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGWEKGI HHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCH VEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERI HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCE RLMPNPRPFDGYIEQTLRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQE EECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHEEEEHHHHHHHHHHHHH IARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITMPQPLQLLQRHLLKHPGGDRV HHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHH MTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQLTEE HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCC PAADVSRYETLRANPPEDRHV CHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023192 [H]