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The map label for this gene is ycdC [C]

Identifier: 238028214

GI number: 238028214

Start: 3039426

End: 3040058

Strand: Reverse

Name: ycdC [C]

Synonym: bglu_1g26670

Alternate gene names: 238028214

Gene position: 3040058-3039426 (Counterclockwise)

Preceding gene: 238028218

Following gene: 238028211

Centisome position: 77.82

GC content: 63.98

Gene sequence:

>633_bases
ATGACTCAGCCAAAAATCAAAAGAGATCCCGAAGGAACCCGTCGCCGCATCCTGCTAGCCGCCGCCGAGGAGTTCGCCAG
CGGGGGCCTGTCCGGTGCCCGCGTCGACCAGATCGCGCGGCGCGCCGAAACCAACGAACGGATGCTCTACTACTACTTCG
GCAGCAAGGAGCAGCTGTTTACCGCCGTGCTCGAGCACGCGTTTTCCGCCCTCAACGAAGCCGAGCGCGTGCTCGATTTC
GACGGCGTGCCGCCGGTGGAAGCCGTGACGCGCCTGGCGCATTTCATTTGGGATTACTACCGGGATCATCCTGAGCTGCT
GCGGCTCGTCAACAACGAGAACCTGCACGAGGCGCGCTACATGCTGAAGTCGCCGCGCATCAGCGAAATGATCTCGCCGC
TCGTGCAGACGCTCGGCAGCGTGCTCGCGCGCGGGCAGAACGCCGGGCTGTTTCGTTCCGACGTCGATCCGCTGCGGTTC
TACGTGACGCTGTCCGGGCTCGGCTATTACATCGTGTCGAACCGCTACACGCTGGCCGCGATGCTCGGCCGCGATTTCAG
CGCCGCCGACGAGCGCAACGAGATCGTGCGAATGAACACCGACATCCTGCTCGCCTACCTGCTGCGCCGCTGA

Upstream 100 bases:

>100_bases
CGCAGCAGGGCGCGACGCCTATCGGGCCTCGCCCACGCCGGTGCCGGAGGCGACGAGGCGTTGCCGGCACGAGCCGGCCG
GATCCACGCGAGCCCAACCC

Downstream 100 bases:

>100_bases
CGGCGCCGCGCGGGCGGGCCGTCGCGCGCGTCCGCTGTTGCGCACACGAAAACGCCACGCAGCGCTCGACCTTCGAGGCC
GGGTGCTGCGTGGCGTTGAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; TetR Family Protein Regulatory Protein; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; YcdC Family Protein C-Terminal Domain; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTQPKIKRDPEGTRRRILLAAAEEFASGGLSGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALNEAERVLDF
DGVPPVEAVTRLAHFIWDYYRDHPELLRLVNNENLHEARYMLKSPRISEMISPLVQTLGSVLARGQNAGLFRSDVDPLRF
YVTLSGLGYYIVSNRYTLAAMLGRDFSAADERNEIVRMNTDILLAYLLRR

Sequences:

>Translated_210_residues
MTQPKIKRDPEGTRRRILLAAAEEFASGGLSGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALNEAERVLDF
DGVPPVEAVTRLAHFIWDYYRDHPELLRLVNNENLHEARYMLKSPRISEMISPLVQTLGSVLARGQNAGLFRSDVDPLRF
YVTLSGLGYYIVSNRYTLAAMLGRDFSAADERNEIVRMNTDILLAYLLRR
>Mature_209_residues
TQPKIKRDPEGTRRRILLAAAEEFASGGLSGARVDQIARRAETNERMLYYYFGSKEQLFTAVLEHAFSALNEAERVLDFD
GVPPVEAVTRLAHFIWDYYRDHPELLRLVNNENLHEARYMLKSPRISEMISPLVQTLGSVLARGQNAGLFRSDVDPLRFY
VTLSGLGYYIVSNRYTLAAMLGRDFSAADERNEIVRMNTDILLAYLLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24036; Mature: 23905

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPKIKRDPEGTRRRILLAAAEEFASGGLSGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALNEAERVLDFDGVPPVEAVTRLAHFIWDYYRDHPELLRLVNNENLHEARY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
MLKSPRISEMISPLVQTLGSVLARGQNAGLFRSDVDPLRFYVTLSGLGYYIVSNRYTLAA
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCHHHHH
MLGRDFSAADERNEIVRMNTDILLAYLLRR
HHCCCCCCCCCCCCEEEECHHHHHHHHHHC
>Mature Secondary Structure 
TQPKIKRDPEGTRRRILLAAAEEFASGGLSGARVDQIARRAETNERMLYYYFGSKEQLF
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
TAVLEHAFSALNEAERVLDFDGVPPVEAVTRLAHFIWDYYRDHPELLRLVNNENLHEARY
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHH
MLKSPRISEMISPLVQTLGSVLARGQNAGLFRSDVDPLRFYVTLSGLGYYIVSNRYTLAA
HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCHHHHH
MLGRDFSAADERNEIVRMNTDILLAYLLRR
HHCCCCCCCCCCCCEEEECHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA