Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 238028190

GI number: 238028190

Start: 3006068

End: 3007537

Strand: Direct

Name: rng [H]

Synonym: bglu_1g26420

Alternate gene names: 238028190

Gene position: 3006068-3007537 (Clockwise)

Preceding gene: 238028189

Following gene: 238028191

Centisome position: 76.95

GC content: 66.12

Gene sequence:

>1470_bases
ATGAACGAAGAAATCCTGATCAACATCACGCCACAGGAAACGCGGGTCGCGCTCGTGCAGCAAGGCGCGGTACAGGAGCT
TCACGTCGAGCGCACGCTCTCGCGCGGGCGCGTCGGCAACATCTATCTCGGCAAGGTGGTGCGCGTGCTGCCGGGCATGC
AGTCGGCCTTCATCGACATCGGCCTCGAGCGTGCCGCGTTCCTGCACGTGGCCGACATCTGGCAGCCGCGGCCGCCCGGC
GACCCGCACGCGAGCGTGCCGCACCCGCCGATCGAGAAGACCGTGTTCGAAGGCCAGACGCTAATGGTGCAGGTGATCAA
GGACCCGATCGGCACCAAGGGCGCGCGGCTGTCGACCCAGGTCAGCATCGCCGGGCGCACGCTCGTCTACCTGCCGCAGG
AGCCGCACATCGGCATCTCGCAGAAGATCGAGAGCGAGGCCGAGCGCGAGGCCGTGCGCGCGCGGCTGACCGCCGTGATC
CCCCCCGAGGAGAAAGGCGGCTACATCGTGCGGACCATCGCCGAGGACGCCACCGCCGAGGAGCTCGGCGCCGACGTCGC
CTACCTGCGCAAGACCTGGACCACCATCGTCGCGCAGGCGCAGCGGCTGCCGGCCACCAGCCTGCTCTACCAGGACCTCG
ATCTCGCGCAGCGCGTGCTGCGCGATTTCGCCAACGACGACACGAGCAAGATCCAGGTCGATTCGCGCGAGACCTTCGCG
CGGCTCTCGAACTTCGCCACCGAGTTCACGCCGGCCGTCAGCGCGCGGCTGCATCACTACACCGGCGAGCGGCCGCTGTT
CGATCTCTACAACATCGAGGCCGAGATCCAGCGCGCGCTGTCGCGGCGCGTGGACCTGAAGTCGGGCGGCTACCTGATGA
TCGACCAGACCGAGGCGATGACGACGATCGACGTCAACACCGGCGGCTACGTCGGCGCGCGCAACTTCGACGACACGATC
TTCAAGACCAACCTCGAGGCCGCGCACACGATCGCGCGCCAGCTGCGGCTGCGCAACCTGGGCGGCATCATCATCATCGA
CTTCATCGACATGGAGAACGCCGAGCATCGCGAGGCCGTGCTGGGCGAGCTGAAGAAGGCGCTCTCGCGTGACCGCACGC
GCGTTACGGTGAACGGCTTCTCGCAGCTGGGACTGGTGGAGATGACGCGCAAGCGCACGCGCGAATCGCTCGCGCACGTG
CTGTGCGAGCCCTGTCCGGTATGCATGGGCAAGGGGCAGGTGAAGACGCCGCGAACGGTTTGCTACGACGTGCTGCGCGA
GATCCTGCGCGAATCGCGGCAGTTCAATCCGCGCGAGTTTCGCGTGATCGCCTCGCAGCAGGTGATCGACCTGTTTCTCG
ACGAGGAGTCGCAGCATCTGGCGATGCTGATCGATTTCATCGGCAAGCCGGTGTCGCTGCAGGTGGAATCGAATTTGAGC
CAGGAGCAGTACGATATCGTGCTGATGTAG

Upstream 100 bases:

>100_bases
GTCGAGCGGATCGACGGATCGCATTCGGGTATCATGGGTCTGCCCCTTTTTGAGACCGCCGCGCTGCTGCGCGCGGCGCG
CGTCGCCTTCTGAGCCCACC

Downstream 100 bases:

>100_bases
AGAGGGATGACTGGCCCGCGCGGCGCTGCCCGCGTCGCCAGCGCGCCGATGTCGCCCGTGGGCGGTCGACTCCGATGAGC
CGCAGCGAACAAGATCCCGG

Product: ribonuclease, Rne/Rng family

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRPPG
DPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPEEKGGYIVRTIAEDATAEELGADVAYLRKTWTTIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFA
RLSNFATEFTPAVSARLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPVCMGKGQVKTPRTVCYDVLREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM

Sequences:

>Translated_489_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRPPG
DPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPEEKGGYIVRTIAEDATAEELGADVAYLRKTWTTIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFA
RLSNFATEFTPAVSARLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPVCMGKGQVKTPRTVCYDVLREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM
>Mature_489_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRPPG
DPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVI
PPEEKGGYIVRTIAEDATAEELGADVAYLRKTWTTIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFA
RLSNFATEFTPAVSARLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTI
FKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHV
LCEPCPVCMGKGQVKTPRTVCYDVLREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
QEQYDIVLM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=494, Percent_Identity=54.6558704453441, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1787325, Length=456, Percent_Identity=37.9385964912281, Blast_Score=286, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 54886; Mature: 54886

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
GLERAAFLHVADIWQPRPPGDPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQ
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
VSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPPEEKGGYIVRTIAEDATAE
EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCHH
ELGADVAYLRKTWTTIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFA
HHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
RLSNFATEFTPAVSARLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCE
TTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAV
EEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
LGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVLCEPCPVCMGKGQVKTPRTV
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
CYDVLREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
HHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
QEQYDIVLM
CCCCCEEEC
>Mature Secondary Structure
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNIYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
GLERAAFLHVADIWQPRPPGDPHASVPHPPIEKTVFEGQTLMVQVIKDPIGTKGARLSTQ
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCEEEE
VSIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPPEEKGGYIVRTIAEDATAE
EEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCHH
ELGADVAYLRKTWTTIVAQAQRLPATSLLYQDLDLAQRVLRDFANDDTSKIQVDSRETFA
HHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
RLSNFATEFTPAVSARLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCE
TTIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHREAV
EEEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
LGELKKALSRDRTRVTVNGFSQLGLVEMTRKRTRESLAHVLCEPCPVCMGKGQVKTPRTV
HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
CYDVLREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLS
HHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
QEQYDIVLM
CCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]