| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027607
Identifier: 238027607
GI number: 238027607
Start: 2217143
End: 2219113
Strand: Reverse
Name: 238027607
Synonym: bglu_1g20280
Alternate gene names: NA
Gene position: 2219113-2217143 (Counterclockwise)
Preceding gene: 238027608
Following gene: 238027606
Centisome position: 56.81
GC content: 64.13
Gene sequence:
>1971_bases ATGAATCGCATTTTCAAAACGCTGCTGCTCGCGGTCTCGCTGGTAGCCGTCTGTGCGCCCCATCTCGCGATGGGGCAGTT TGTTCCTGGCCAGGTGCTGACCGCGGAGCAGTTGAACACGGCATTCAGCCGCGTTGCCGCAAACGCATTGCCGGTGGCGG GTGGAACCCTCACGGGGCCGCTCAACGGCACCACGGCGTCGTTTGCGACGGGCAACTTCTCGACCGGCAATTTCGCGACG TTGACCAGTACGGGGAGCGTTTCGTTCTCGACGCCTCTTTCGTTTGCCTCGGGCGGCACCGGCGCGACCACGGCGCTGGG CGCGACCGGCAATCTGCAGTTCCAGGCATCGCTGTCCGGCGCCGGCGGCCGCTCGGTCGCAAGCAAGCTGAGCGACGTGG TGAGCATCCTCGACTTCCCGGGCTGCGACAAAACCGGTGTAGCCGATAGCACGGCCTGCATCCAGGCCGCGCTGAACTCG GGAGCGAAGACCGTCTATATCCCGGCGGGCCAGTATCGCGAGAGCGGCCTGGTCTTGCCGCAGACCGTCGGATTCACGCT CTACGGAGACGGCCCGAACAGTGTCCTGATCCAGACGGGCGGCTCGATCAGCTATCCGGCGATCGCGGGCGCCTTCACGT TCGACTCGCACTCGACGATCCGTGATCTGAAGTTCGACGGCACCGCCGGCACCGCGAACACGCTCGACACCACGTTCGCG CAGACGCTCGACCTGCTGAACCTGGCCTTCAACAATGTCCCGGCCGGCTATTCGTCGATCAAGATCGACGGCAACCCGAC GACGTCGGTCTACATGCACGACGTGCGGCTGAAGAACATCCGCATCTACTCGACGACTGCCGGCAAGGCCGGGATCGAGT TGGGGGCGTTCGCATCCGACTCGACGATCGACGGCTTCATCATGAACGGCGGGTTCGTCGTGAACTACTGCATCTACGCC AACCCCGGCGCGCAGACCACGATGATCCAGAACTCGCATCCCTACAACGCGTCGATCAACGTCGTGCGCCTGGCAGGGAA CAACAACGACTTCGGGTTCTTTGGCAACACGATCGACAACGCGCTCGGCGACGTCTTGTACATCAAGAACTCCGCATACA CGCGTATCGCATCGACGTGGATCGAGTCGATCAACAGCCTTCAGCGCGGCCTCGTGCTGGATGGCTCGTCGAACAATACC GCCATGGGGCTCGGCTGCCAGACATACGGGGTGACGAACGCAACATCGTGCGTCGCCGAGATCAACGGCGCTGCCGGAAA CCAGATCTTCGGCGCGCAGCTCGACAGCGCATCGAACTACTCCGCGCCGTTCAATCTCACCGGATCGGGAAGCTTCTACC AGTCCGTGAACAGCGGCAACTCGTTGAGCTCGATGAGTGCTGCGGCCGGCTCGTCGCCAGCGCTGGCCGCCATCGGCTCG GACGCCACGATTCCCGTGACGCTCAGTCCCAAGGGCGGCGGCGCGGTGCAGATGAAGCTGAGCAACTCGGCCACGGCGAG CTTCTATTCCGACACCGCATCCGAGCTCGCGGTCGAGGCATACAACACGGCGTCAGCCGGGACGAAGTTCAACATCAATC TCACCAAATACGGCGGCCGCCTGCTCGTCGGCGGCACGGACGACGGCACTAACAAGCTGCAGGTTGGAGGCTCGGCCGCC GTCTACGGGAACCTGGCCGCGACCGGCACCGGCGCGATGCCGTTGTATTCGACCTCCGGCGCGGCCGCCAACGCGCCGCA CATGGTGAAGGGGACGGCGACACTCGCCTCGGGCGCGGCCACGGTCACGCTCTCGGGCGCAGCTGCCTATACCTCGTCGA CCAGCTATGCATGCACGGCCACCGACACGACCGCTACCAACGCGGTGCGCATCTCACAAACCTCCGGCACCTCGTTCGCT TTGAGCGGCACCGGAACCGACGTCGTGCAGTTCGTTTGCACTGGAACCTGA
Upstream 100 bases:
>100_bases CGCTGACTGGCACCCGAACGACGGGCAGCGCTGGTATGTCGTGAACGGCAGCTTGACCAATGTGGCGCCGACGTCGTCGA ACTGACCGGGGAAGAGGACC
Downstream 100 bases:
>100_bases GCGCGCTGCACTTCCTTTCCCGGGGATCAAATGCCTGAACAAAGATCGACCAACGCTGGCGTCGAGGAGCGACTGCGCAG CGGAGACCGCCGCTTCTCGA
Product: outer membrane autotransporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 656; Mature: 656
Protein sequence:
>656_residues MNRIFKTLLLAVSLVAVCAPHLAMGQFVPGQVLTAEQLNTAFSRVAANALPVAGGTLTGPLNGTTASFATGNFSTGNFAT LTSTGSVSFSTPLSFASGGTGATTALGATGNLQFQASLSGAGGRSVASKLSDVVSILDFPGCDKTGVADSTACIQAALNS GAKTVYIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGSISYPAIAGAFTFDSHSTIRDLKFDGTAGTANTLDTTFA QTLDLLNLAFNNVPAGYSSIKIDGNPTTSVYMHDVRLKNIRIYSTTAGKAGIELGAFASDSTIDGFIMNGGFVVNYCIYA NPGAQTTMIQNSHPYNASINVVRLAGNNNDFGFFGNTIDNALGDVLYIKNSAYTRIASTWIESINSLQRGLVLDGSSNNT AMGLGCQTYGVTNATSCVAEINGAAGNQIFGAQLDSASNYSAPFNLTGSGSFYQSVNSGNSLSSMSAAAGSSPALAAIGS DATIPVTLSPKGGGAVQMKLSNSATASFYSDTASELAVEAYNTASAGTKFNINLTKYGGRLLVGGTDDGTNKLQVGGSAA VYGNLAATGTGAMPLYSTSGAAANAPHMVKGTATLASGAATVTLSGAAAYTSSTSYACTATDTTATNAVRISQTSGTSFA LSGTGTDVVQFVCTGT
Sequences:
>Translated_656_residues MNRIFKTLLLAVSLVAVCAPHLAMGQFVPGQVLTAEQLNTAFSRVAANALPVAGGTLTGPLNGTTASFATGNFSTGNFAT LTSTGSVSFSTPLSFASGGTGATTALGATGNLQFQASLSGAGGRSVASKLSDVVSILDFPGCDKTGVADSTACIQAALNS GAKTVYIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGSISYPAIAGAFTFDSHSTIRDLKFDGTAGTANTLDTTFA QTLDLLNLAFNNVPAGYSSIKIDGNPTTSVYMHDVRLKNIRIYSTTAGKAGIELGAFASDSTIDGFIMNGGFVVNYCIYA NPGAQTTMIQNSHPYNASINVVRLAGNNNDFGFFGNTIDNALGDVLYIKNSAYTRIASTWIESINSLQRGLVLDGSSNNT AMGLGCQTYGVTNATSCVAEINGAAGNQIFGAQLDSASNYSAPFNLTGSGSFYQSVNSGNSLSSMSAAAGSSPALAAIGS DATIPVTLSPKGGGAVQMKLSNSATASFYSDTASELAVEAYNTASAGTKFNINLTKYGGRLLVGGTDDGTNKLQVGGSAA VYGNLAATGTGAMPLYSTSGAAANAPHMVKGTATLASGAATVTLSGAAAYTSSTSYACTATDTTATNAVRISQTSGTSFA LSGTGTDVVQFVCTGT >Mature_656_residues MNRIFKTLLLAVSLVAVCAPHLAMGQFVPGQVLTAEQLNTAFSRVAANALPVAGGTLTGPLNGTTASFATGNFSTGNFAT LTSTGSVSFSTPLSFASGGTGATTALGATGNLQFQASLSGAGGRSVASKLSDVVSILDFPGCDKTGVADSTACIQAALNS GAKTVYIPAGQYRESGLVLPQTVGFTLYGDGPNSVLIQTGGSISYPAIAGAFTFDSHSTIRDLKFDGTAGTANTLDTTFA QTLDLLNLAFNNVPAGYSSIKIDGNPTTSVYMHDVRLKNIRIYSTTAGKAGIELGAFASDSTIDGFIMNGGFVVNYCIYA NPGAQTTMIQNSHPYNASINVVRLAGNNNDFGFFGNTIDNALGDVLYIKNSAYTRIASTWIESINSLQRGLVLDGSSNNT AMGLGCQTYGVTNATSCVAEINGAAGNQIFGAQLDSASNYSAPFNLTGSGSFYQSVNSGNSLSSMSAAAGSSPALAAIGS DATIPVTLSPKGGGAVQMKLSNSATASFYSDTASELAVEAYNTASAGTKFNINLTKYGGRLLVGGTDDGTNKLQVGGSAA VYGNLAATGTGAMPLYSTSGAAANAPHMVKGTATLASGAATVTLSGAAAYTSSTSYACTATDTTATNAVRISQTSGTSFA LSGTGTDVVQFVCTGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66104; Mature: 66104
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: PS00800 PECTINESTERASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRIFKTLLLAVSLVAVCAPHLAMGQFVPGQVLTAEQLNTAFSRVAANALPVAGGTLTGP CHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCEEECC LNGTTASFATGNFSTGNFATLTSTGSVSFSTPLSFASGGTGATTALGATGNLQFQASLSG CCCCEEEEECCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECC AGGRSVASKLSDVVSILDFPGCDKTGVADSTACIQAALNSGAKTVYIPAGQYRESGLVLP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEEEE QTVGFTLYGDGPNSVLIQTGGSISYPAIAGAFTFDSHSTIRDLKFDGTAGTANTLDTTFA EECCEEEECCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH QTLDLLNLAFNNVPAGYSSIKIDGNPTTSVYMHDVRLKNIRIYSTTAGKAGIELGAFASD HHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEECCCCC STIDGFIMNGGFVVNYCIYANPGAQTTMIQNSHPYNASINVVRLAGNNNDFGFFGNTIDN CCCCEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCHHHH ALGDVLYIKNSAYTRIASTWIESINSLQRGLVLDGSSNNTAMGLGCQTYGVTNATSCVAE HHCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEECEEECCCCCHHHHHHC INGAAGNQIFGAQLDSASNYSAPFNLTGSGSFYQSVNSGNSLSSMSAAAGSSPALAAIGS CCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHHHCCCCCCCHHHHHCCCCCCCEEEECC DATIPVTLSPKGGGAVQMKLSNSATASFYSDTASELAVEAYNTASAGTKFNINLTKYGGR CCEEEEEECCCCCCEEEEEECCCCCEEEHHCCHHHHEEEEECCCCCCCEEEEEEEECCCE LLVGGTDDGTNKLQVGGSAAVYGNLAATGTGAMPLYSTSGAAANAPHMVKGTATLASGAA EEEECCCCCCCEEEECCCEEEEECEEECCCCCCCEEECCCCCCCCCEEEECCEEECCCCE TVTLSGAAAYTSSTSYACTATDTTATNAVRISQTSGTSFALSGTGTDVVQFVCTGT EEEEECCEEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC >Mature Secondary Structure MNRIFKTLLLAVSLVAVCAPHLAMGQFVPGQVLTAEQLNTAFSRVAANALPVAGGTLTGP CHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCEEECC LNGTTASFATGNFSTGNFATLTSTGSVSFSTPLSFASGGTGATTALGATGNLQFQASLSG CCCCEEEEECCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEECCCCCEEEEEEECC AGGRSVASKLSDVVSILDFPGCDKTGVADSTACIQAALNSGAKTVYIPAGQYRESGLVLP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCEEEE QTVGFTLYGDGPNSVLIQTGGSISYPAIAGAFTFDSHSTIRDLKFDGTAGTANTLDTTFA EECCEEEECCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH QTLDLLNLAFNNVPAGYSSIKIDGNPTTSVYMHDVRLKNIRIYSTTAGKAGIELGAFASD HHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEECCCCC STIDGFIMNGGFVVNYCIYANPGAQTTMIQNSHPYNASINVVRLAGNNNDFGFFGNTIDN CCCCEEEECCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCHHHH ALGDVLYIKNSAYTRIASTWIESINSLQRGLVLDGSSNNTAMGLGCQTYGVTNATSCVAE HHCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEECEEECCCCCHHHHHHC INGAAGNQIFGAQLDSASNYSAPFNLTGSGSFYQSVNSGNSLSSMSAAAGSSPALAAIGS CCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHHHCCCCCCCHHHHHCCCCCCCEEEECC DATIPVTLSPKGGGAVQMKLSNSATASFYSDTASELAVEAYNTASAGTKFNINLTKYGGR CCEEEEEECCCCCCEEEEEECCCCCEEEHHCCHHHHEEEEECCCCCCCEEEEEEEECCCE LLVGGTDDGTNKLQVGGSAAVYGNLAATGTGAMPLYSTSGAAANAPHMVKGTATLASGAA EEEECCCCCCCEEEECCCEEEEECEEECCCCCCCEEECCCCCCCCCEEEECCEEECCCCE TVTLSGAAAYTSSTSYACTATDTTATNAVRISQTSGTSFALSGTGTDVVQFVCTGT EEEEECCEEECCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA