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The map label for this gene is rbfA [H]

Identifier: 238027583

GI number: 238027583

Start: 2191921

End: 2192289

Strand: Reverse

Name: rbfA [H]

Synonym: bglu_1g20010

Alternate gene names: 238027583

Gene position: 2192289-2191921 (Counterclockwise)

Preceding gene: 238027584

Following gene: 238027582

Centisome position: 56.12

GC content: 59.35

Gene sequence:

>369_bases
ATGACGAAAAAACGCAGTTCTCCCAATCGCAACGTCCAGATCGCCGACCAGATCCAGCGCGATCTGTCCGAACTCATCAT
GCGCGAAGTGAAGGATCCCCGCATCGGGATCGTCACGATCCAGAGCGTCGAGCTGACGCCCGACTACGCGCATGCGAAAG
TCTATTTCACGGCGCTGACGGGCGACCCCGTGCAGACCCAGGAAGCGCTCAACCACGCGTCGGGCCACCTGCACAACCTG
CTGTTCAAGCGCCTGCACATCCACACGGTGCCGACGCTGCATTTCCATTACGACAAGACGATCGAAAAAGCAGTCGAGAT
GTCGCGCCTGATCGAGCAGGCGAATTCGACGCGTGCGAAGGACGACTGA

Upstream 100 bases:

>100_bases
GCTATCATGGGCGGGACAGGCGTGAAGCCTGTCCCGCCCATTTTCATGGCGTCGGCTGCGAAGCCGCCGGTCGTCCAATG
AACGGAAAGACGGATTCACC

Downstream 100 bases:

>100_bases
TTCGCGCGCCGACTTCCGCCGATTGCCGATTTCGCCATGACGACTGCTCCCCAACGCTCCCAGCGCCCGCGCGTGCCGCG
GCGCCTGCTCGACGGCGTGC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MTKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPVQTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDKTIEKAVEMSRLIEQANSTRAKDD

Sequences:

>Translated_122_residues
MTKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPVQTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDKTIEKAVEMSRLIEQANSTRAKDD
>Mature_121_residues
TKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPVQTQEALNHASGHLHNLL
FKRLHIHTVPTLHFHYDKTIEKAVEMSRLIEQANSTRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=37.0689655172414, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13980; Mature: 13849

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPVQTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDKTIEKAVEMSRLIEQANSTRAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC
>Mature Secondary Structure 
TKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPVQTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDKTIEKAVEMSRLIEQANSTRAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA